Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2308 134 2e-26 seq8067 116 5e-21 seq3601 89.7 7e-13 >seq2308 Length=189564 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||||||||| | || |||||||| || || ||||||||||| || || || | Sbjct 135512 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGGCCAGGCATTAGCCCTCGTTTCT 135571 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| | |||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 135572 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 135631 Query 39759 CAAC 39762 | || Sbjct 135632 CTAC 135635 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGA-TTATCTTCTTG---TGACATAACTCCCATT 39325 |||| || || |||| |||| || ||| |||||| | | |||||| || ||||| Sbjct 133857 TTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGGCTTGACATCACACCCATC 133915 Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||| ||||| || || || || || || || |||||||||||||||| || ||||| Sbjct 133916 CTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTC 133975 Query 39386 TCCATGAAATCAAACGGATT 39405 |||||||||||||| ||||| Sbjct 133976 TCCATGAAATCAAATGGATT 133995 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | ||| ||||| || | | |||||||||||||||||| |||||||| || || Sbjct 137486 ATCTTTTATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTTTCCATGGC 137545 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | ||||| || | |||||| ||| Sbjct 137546 AATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGACTTGTACTTCT 137591 >seq8067 Length=36449 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| || || || || || || ||||||| || | ||| ||| Sbjct 28360 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 28419 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| || ||||||| |||||||||||||| ||||| || || ||||| ||| Sbjct 28420 AGCCAAAATATTGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 28479 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 28480 ACCACTCTTTCACC 28493 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 || ||||| |||||||| || || |||| |||| |||||||| |||||||||||| | Sbjct 33333 ACCTCTTCTGCTGTCCAGAAGGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 33392 Query 40175 TATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTT 40213 || || ||||| || || ||||||| || || |||||| Sbjct 33393 TACTGGATTGGGAAGATGACAAATCGATGGGGGTTTTTT 33431 >seq3601 Length=132737 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || || || | |||||||| ||||| ||||||||||| || ||||| || ||| Sbjct 118968 GTCCCAGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCATTTCTCGGAAAGAAGGTTG 118909 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||||||| |||| || || || | || || ||||| | | || | ||||| | Sbjct 118908 TAGGTTTCAATGGCTGCCTCAATGTCGCTCTTGTGGATTCCCACAGACACCCTCATCAGC 118849 Query 70111 ATATGCTGAGGTCGTTC 70127 || ||||| || ||||| Sbjct 118848 ATGTGCTGGGGACGTTC 118832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686572961701320