Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7460 178 3e-39 seq6913 172 1e-37 seq6119 168 2e-36 >seq7460 Length=44690 Score = 178 bits (196), Expect = 3e-39 Identities = 171/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||| || | |||||| Sbjct 44270 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCT 44211 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||||| |||||||||||| Sbjct 44210 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 44151 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| |||| || ||||| || ||||| Sbjct 44150 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCCACCTCCAGGGTGATG 44094 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| ||||| | ||||||||| Sbjct 44093 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 44056 Score = 168 bits (186), Expect = 2e-36 Identities = 167/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||| | ||||| || |||||||| || |||||||| || || | ||| || | |||||| Sbjct 44498 AGGGCCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCT 44439 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||||| |||||||||||| Sbjct 44438 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 44379 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| |||| || ||||| || ||||| Sbjct 44378 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCCACCTCCAGGGTGATG 44322 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| ||||| | |||||| Sbjct 44321 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 44287 Score = 134 bits (148), Expect = 3e-26 Identities = 138/179 (77%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||| || | |||||||||||||||||||| || ||||| || | || ||| Sbjct 44690 TAGTCGGAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGG 44631 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 |||||||||| |||||||||||||||||||| || ||||| || |||||||| | Sbjct 44630 TCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---G 44574 Query 211059 CTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || ||||| ||||| || || | ||||| ||||| | |||||| Sbjct 44573 CTTGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 44515 >seq6913 Length=53205 Score = 172 bits (190), Expect = 1e-37 Identities = 168/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||| || | |||||| Sbjct 52771 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCT 52830 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||||| |||||||||||| Sbjct 52831 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 52890 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| |||| || ||||| || ||||| Sbjct 52891 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCCACCTCCAGGGTGATG 52947 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| ||||| | |||||| Sbjct 52948 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 52982 Score = 138 bits (152), Expect = 3e-27 Identities = 155/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||| | || | ||| || || |||||| Sbjct 52999 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGCCTTCGTCGGAAAGCGTGCTGCCATCT 53058 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||||| |||||||||||| Sbjct 53059 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 53118 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || |||| || |||||||| |||| || ||| | || || | Sbjct 53119 TGGATCTTGGCCTTGGCGTTCTCAATGGTGTC---GCTTGGCTCCACCGCCAGGGTAGTG 53175 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || | ||||| ||||| Sbjct 53176 GTCTTCCCAGTCAAGGTCTTCACAAA 53201 >seq6119 Length=68287 Score = 168 bits (186), Expect = 2e-36 Identities = 167/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | |||||| | ||||| Sbjct 55949 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGACCATCC 55890 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || ||||||| ||||| |||||| Sbjct 55889 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCC 55830 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||||| || || ||||||||| ||| || ||||| |||||||| Sbjct 55829 TGGATCTTGGCCTTCACATTCTCAATGGTGTCA---CTTGGCTCCACCTCCAGAGTGATG 55773 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| ||||| | |||||| Sbjct 55772 GTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 55738 Score = 165 bits (182), Expect = 2e-35 Identities = 168/218 (77%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || ||||| ||||| || | |||||| | |||||| Sbjct 55721 AGGACAAGATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCT 55662 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || ||||||| ||||| |||||| Sbjct 55661 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCC 55602 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||| || || || ||||||||| ||| || || || || ||||| Sbjct 55601 TGGATCTTAGCTTTTACATTCTCAATGGTGTCA---CTTGGCTCCACTTCCAGGGTGATG 55545 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| ||||| | ||||||||| Sbjct 55544 GTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATTTT 55507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158571108000245