Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2308 113 6e-20 seq8067 105 1e-17 seq3601 89.7 7e-13 >seq2308 Length=189564 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||||||||| | || |||||||| || || ||||||||||| || || || || Sbjct 135514 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGGCCAGGCATTAGCCCTCGTTTCTTC 135573 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| | || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 135574 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 135633 Query 46774 AC 46775 || Sbjct 135634 AC 135635 Score = 100 bits (110), Expect = 4e-16 Identities = 108/140 (77%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGA-TTATCTTCTTG---TGACATAACTCCCATT 46338 |||| || || |||| |||| || ||| |||||| | | |||||| || ||||| Sbjct 133857 TTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGGCTTGACATCACACCCATC 133915 Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 |||| ||||| |||||||| || || || || |||||||||||||||| || ||||| Sbjct 133916 CTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTC 133975 Query 46399 TCCATAAAATCAAACGGATT 46418 ||||| |||||||| ||||| Sbjct 133976 TCCATGAAATCAAATGGATT 133995 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | ||| ||||| || | | ||||||||||||||||||||||||||| || || Sbjct 137486 ATCTTTTATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTTTCCATGGC 137545 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | ||||| || | ||||| ||| Sbjct 137546 AATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGACTTGTACTTCT 137591 >seq8067 Length=36449 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| ||||| | ||| || || || || || || ||||||| || | ||| | Sbjct 28358 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 28417 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 ||||||||||||| || || |||| ||||||||||| || ||||| ||||| || || | Sbjct 28418 TGAGCCAAAATATTGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACG 28477 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 28478 CAACCACTCTTTCACC 28493 >seq3601 Length=132737 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || || | |||||||| || || ||||||||||| || ||||| || ||| Sbjct 118968 GTCCCAGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCATTTCTCGGAAAGAAGGTTG 118909 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| |||| || || || | | || ||||| |||| || | ||||| | Sbjct 118908 TAGGTTTCAATGGCTGCCTCAATGTCGCTCTTGTGGATTCCCACAGACACCCTCATCAGC 118849 Query 77114 ATATGCTGAGGTCGTTC 77130 || ||||| || ||||| Sbjct 118848 ATGTGCTGGGGACGTTC 118832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712585837460160