Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7460 136 1e-26 seq6913 134 3e-26 seq6119 132 1e-25 >seq7460 Length=44690 Score = 136 bits (150), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA- 177973 ||||||| | || || ||||| || | || || || || |||||||| |||||||| Sbjct 44056 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAG 44112 Query 177974 --AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 |||| |||||||| ||||||||||| ||||| |||||||| ||||| || ||| Sbjct 44113 CCAAGC---GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCT 44169 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || |||||||| | || ||||| || || || ||||| |||||||| | || ||| || Sbjct 44170 CCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACGCTTTCC 44229 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || ||| |||| || || || || || || || || Sbjct 44230 GACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGT 44267 Score = 134 bits (148), Expect = 3e-26 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || ||||| || | || || || || |||||||| |||||||| |||| Sbjct 44290 CAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCAAGC--- 44346 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 44347 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 44406 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | || ||| |||| || ||| Sbjct 44407 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACGCTTTCCGACTACAAC 44466 Query 178101 GTCCAAAAAGAATCAACACTGCATCT 178126 |||| || || || || || || || Sbjct 44467 ATCCAGAAGGAGTCCACCCTCCACCT 44492 Score = 125 bits (138), Expect = 2e-23 Identities = 134/176 (76%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || ||||| || | || || || || |||||||| |||||||| |||| Sbjct 44518 CAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCAAGC--- 44574 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 44575 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 44634 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || | || ||||| ||||| || ||||| |||||||| | || ||| |||| || Sbjct 44635 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACGCTTTCCGACTA 44690 >seq6913 Length=53205 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || ||||| || | || || || || |||||||| |||||||| |||| Sbjct 52979 CAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCAAGC--- 52923 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 52922 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 52863 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | || ||| |||| || ||| Sbjct 52862 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACGCTTTCCGACTACAAC 52803 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 52802 ATCCAGAAGGAGTCCACCCTCCACCTGGT 52774 >seq6119 Length=68287 Score = 132 bits (146), Expect = 1e-25 Identities = 169/230 (73%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | ||||| || || |||||||| || ||||| Sbjct 55507 AAAATGC---AGATCTTTGTGAAGACGTTGACAGGCAAGACCATCACCCTGGAAGTGGA- 55562 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || || ||||||| ||||| || ||| ||||| |||||||||||||| || |||| Sbjct 55563 -GCCAAGTGACACCATTGAGAATGTAAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTC 55621 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || ||||| || || || ||||| |||||||| | || ||| | | Sbjct 55622 CCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTG 55681 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||| |||| || || || || || |||||||| || | || ||| Sbjct 55682 ACTATAATATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGA 55731 Score = 118 bits (130), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || ||||| || |||||||| || || Sbjct 55741 CAGATCTTTGTCAAGACACTGACCGGCAAGACCATCACTCTGGAGGTGGA--GCCAAGTG 55798 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || ||||| || |||| Sbjct 55799 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGATCAGC 55858 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || ||| | || || ||| Sbjct 55859 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTTCTGACTACAACA 55918 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || |||||||| || | || ||| Sbjct 55919 TCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGA 55959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203127967788922