Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2281 87.8 2e-12 seq898 87.8 2e-12 >seq2281 Length=154634 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 || |||||||| ||||||||||| || || || | || ||||| |||| ||||| Sbjct 5520 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5579 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 | ||||||||| || || || | ||||||||||| || || ||||| | |||||||| Sbjct 5580 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 5639 Query 17108 ATTAATCGTTC 17118 || | || ||| Sbjct 5640 ATCACTCTTTC 5650 >seq898 Length=501174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||| ||||||| || |||||||| || || |||||||||||||| ||||| Sbjct 435995 ATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTGG 435936 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || |||||||| | ||||| ||||| Sbjct 435935 AAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTC 435898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517494298292400