Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1849 91.5 1e-13 >seq1849 Length=224522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 18971 AATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATC 19030 ||||| |||||||||| || | | || || |||||| || |||| |||||| | || Sbjct 144798 AATGGCTTTACCTCCATGCCATGCTCTCTGCCAATTTTACATTTCAAATGGTGAACTCTC 144739 Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGG 19090 || || | || ||| | || || || ||||| || || || || |||||||| ||| | Sbjct 144738 TTGTCAGTTGTATCAGCGTTCTGGAGACATGGGACTGGGAGTTCCTTTCAACATAGCTAG 144679 Query 19091 ATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || |||||||||| | || | || ||||||||||| || || Sbjct 144678 TTACTCACTTCTTACTTCAATGATTGCCCATGTTACAGGCCTGAA 144634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399465389186850