Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq183 86.0 5e-12 seq1849 84.2 2e-11 >seq183 Length=1206449 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| || || || || | |||||||||| ||||||||| || || | |||||| Sbjct 29178 CTTCAGTTCTTTACTTAGTACTATATTAATTCTGTTTTTTAAAGGGCGATTTTCCTCAGG 29237 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 || |||||||||||||| ||||||| || || | ||| || || Sbjct 29238 GATGGAGAACCAAGTCTTCCTACCCATTATGACCACATTTTGCTT 29282 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||| | ||||| | ||||||| |||||||||||| || |||| ||||||||| ||||| Sbjct 12660 AAGTCTATATTTTTTAAGATCAATTTCTGGAAAAAATGTATCACTTTCAAAGTCATGCAT 12719 Query 4116 GATCCTAGTCACAAACAGTT 4135 || || |||||||||| || Sbjct 12720 AATTCTTGTCACAAACAATT 12739 >seq1849 Length=224522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || || ||||| ||||| | |||||| || ||||| || || || | ||||||| Sbjct 145816 CTTTGTACTCAGCTCCAAAATGTCGCCACTGGAAGCCATAAACGGGACCTAAGTCTCCTT 145875 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| | |||| || |||| ||||| ||| | ||| ||||| |||||||||| Sbjct 145876 CCTCTCTAGAAAAAAATCCTTGTTTGTCTAAGAATTGCCGAGAACCATTGGCATCCCAAA 145935 Query 102153 T 102153 | Sbjct 145936 T 145936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361216286200430