Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2696 100 2e-16 seq1305 96.9 3e-15 >seq2696 Length=106704 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | || || || |||| |||||||| ||||| Sbjct 61553 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 61494 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||| ||||| || | |||||| || || ||| || || Sbjct 61493 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 61434 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||||||| || | ||| ||||| || ||||| || || Sbjct 61433 ACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 61374 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || |||||||| Sbjct 61373 TTCACAAAGATCTGCATTTT 61354 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | || || || |||| |||||||| ||||| Sbjct 61781 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 61722 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||| ||||| || | |||||| || || ||| || || Sbjct 61721 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 61662 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||||||| || | ||| ||||| || ||||| || || Sbjct 61661 ACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 61602 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 61601 TTCACAAAGATCTGCAT 61585 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | || || || |||| |||||||| ||||| Sbjct 62701 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 62642 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||| ||||| || | |||||| || || ||| || || Sbjct 62641 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 62582 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||||||| || | ||| ||||| || ||||| || || Sbjct 62581 ACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 62522 Query 21159 TTGACAAATATTTG 21172 || ||||| || || Sbjct 62521 TTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 20997 TTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGC 21056 || ||||| | ||||| || | || |||||||| ||||| ||| | || || ||||| Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767 Query 21057 TGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCA 21116 ||||| || | |||||||||||| ||| || ||||| | | | || ||| Sbjct 275766 TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA 275707 Query 21117 CCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 | |||||| |||| ||| ||||||||||| || || || || ||||| || |||||| Sbjct 275706 CTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATT 275647 Query 21177 TTGAATCT 21184 || |||| Sbjct 275646 TTTTATCT 275639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422218389967880