Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq750 138 2e-27 >seq750 Length=573183 Score = 138 bits (152), Expect = 2e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| |||| ||||||| |||||| ||||| ||||| || || || |||| || | Sbjct 118276 GATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGAATTGAGTATCTGGACACAAT 118217 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||| ||||| || || || |||||||| || | |||||||| || || ||||| ||||| Sbjct 118216 ATTCTTCATCCTAAGAAAGAAATTTAACCAAATCAGTTTTCTTCATGTCTATCACCATTT 118157 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 |||||||||||| || | ||| | || || |||||| |||| ||||| || Sbjct 118156 CACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACA 118106 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 |||||||| | |||| || || || || |||| ||||| || |||||||| ||||| Sbjct 113389 CAGTTCCACGTGACTATTGGCCACACCGCCCTGTCTATTTATATTGATTGCCCCTTTCCT 113330 Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308 |||||||| || ||| || ||| ||||| | | | ||| || | |||||||||||| Sbjct 113329 AAATGGATGCACTGGGGTGTCATTTTCTATGCCAGCACTTTTATTGTTCTGTTTGGTAAC 113270 Query 52309 TTCTATTTTAGAACATACAAGA 52330 ||||| | | | |||||||||| Sbjct 113269 TTCTACTATCGGACATACAAGA 113248 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||||||||| | ||| |||| || || ||| | ||||||| || ||||| Sbjct 119156 GCATTTTTTGGAGCTCATATGAATGCTTTCATTCACGTTGTCATGTACATGTACTATGGA 119097 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| || | || |||||| || ||||||||||| || | || ||| Sbjct 119096 CTAGCTGCCTGTGGCCCAAAAATCCAAAAGTACCTTTGGTGGAAACGATACTTGACCATA 119037 Query 52177 ATGCAGTTGGTA 52188 ||||| || ||| Sbjct 119036 ATGCAATTAGTA 119025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923105288117200