Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2696 109 6e-19 seq113 98.7 1e-15 seq3994 96.9 4e-15 seq1856 96.9 4e-15 >seq2696 Length=106704 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| || | ||| | ||| |||||| || || ||||| |||| Sbjct 61583 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 61524 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| ||||| || || | || ||| ||||| | || Sbjct 61523 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 61464 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| |||||| |||| || | | ||||| || | ||||| Sbjct 61463 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 61404 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | ||||||||||| || || | ||||| |||||||| |||||||| Sbjct 61403 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| || | ||| | ||| |||||| || || ||||| |||| Sbjct 61811 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 61752 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| ||||| || || | || ||| ||||| | || Sbjct 61751 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 61692 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| |||||| |||| | | | ||||| || | ||||| Sbjct 61691 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 61632 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 61631 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTT----CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAG 60106 ||| | |||||| || |||| || | ||||||||||||| ||||||||||||||||| Sbjct 59505 TTTTTAAAAAATATTGGGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAG 59446 Query 60107 GCGGACATACTCACCACTATACTACCGAGGA 60137 |||| ||||| |||||||||||| |||||| Sbjct 59445 GCGGGGATACTTACCACTATACTAACGAGGA 59415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 57816 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 57757 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 57756 TACTAACGAGGA 57745 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| || | ||| | ||| |||||| || || ||||| |||| Sbjct 62731 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 62672 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| ||||| || || | || ||| ||||| | || Sbjct 62671 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 62612 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| |||||| |||| | | | ||||| || | ||||| Sbjct 62611 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 62552 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTG 43180 || | ||||||||||| || || | ||||| |||||||| || Sbjct 62551 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq113 Length=1446452 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60057 AAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| | ||||| || | ||||||||||||| ||||||||||||||||||||| || Sbjct 310951 AAAAATCGTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 310892 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| |||||||||||| |||||| Sbjct 310891 ACTTACCACTATACTAACGAGGA 310869 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1378891 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1378950 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1378951 TATACTAACGAGGA 1378964 >seq3994 Length=24899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 19588 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 19529 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 19528 ATACTAACGAGGAATG 19513 >seq1856 Length=223512 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 154670 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 154611 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 154610 ATACTAACGAGGA 154598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571760918580400