Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq898 107 2e-18 seq2281 102 8e-17 seq1591 102 8e-17 seq1132 95.1 1e-14 >seq898 Length=501174 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| |||||||| || |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 435996 AATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 435937 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | ||||||||||| Sbjct 435936 GAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTC 435898 >seq2281 Length=154634 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | ||||| || || ||||| |||||||||| |||| || | Sbjct 5518 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5577 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||||||||| || ||||| | |||||||||||| || ||||| || || ||||| | Sbjct 5578 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACG 5637 Query 16377 CAACCAATCGCTCACC 16392 ||| || || ||||| Sbjct 5638 CAATCACTCTTTCACC 5653 >seq1591 Length=275930 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||||||| ||||| || ||| || |||| ||| | |||||||||| | | || Sbjct 184726 AAAAATCAGCATCTAAAGTAAATACTTTATTATTTGCTTGGGACATAACTGCAAAATGTT 184667 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| ||| | ||||||||||| ||||||||||| | ||||| || |||| Sbjct 184666 GATATTCTGAAACCCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTCTCCA 184607 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | || |||||||| |||| || Sbjct 184606 TGAAGTCAAAAGGGTTTTCTG 184586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||| ||||| | || ||||| ||||||||||| |||||||||||||| ||| ||| Sbjct 182786 CCCAGTTCCAGGAGTAGCCTATCAGCCACAAATTCAATATACTGTTTCATCAAAATACAA 182727 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 |||||||| || ||| ||||| | || ||||| ||||| Sbjct 182726 TTCATTCCAATCAATCCCACAGGTAAGGCCTCTGTCAAAAA 182686 >seq1132 Length=407820 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 |||||||||| ||| |||||||||| | || | |||||||||||||||||| || | Sbjct 174124 TTGACATAACACCCATCCTTTGATATTCCCCTACACGCTTTTCAAAGAAATTTGTCTTGC 174065 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 |||| || || ||||| |||||||| ||||| ||||| Sbjct 174064 CTTCCAAAGAGATATTCTCCATAAAGTCAAATGGATT 174028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462466153498000