Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq74 450 1e-121 seq32 122 6e-23 >seq74 Length=1667982 Score = 450 bits (498), Expect = 1e-121 Identities = 778/1124 (69%), Gaps = 16/1124 (1%) Strand=Plus/Plus Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||| ||| |||| ||||| |||||||| | | || ||| ||||| || | Sbjct 1605755 CATCAGCTGCTCTGAGATCATCAGAGGGGACACGAAGGCTATGG---AGGCCGCTCTGGT 1605811 Query 107582 CAACCTGGA--AGTG-AAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACAT 107638 | | || |||| ||||| ||||||||| | || || | | ||| | ||| | Sbjct 1605812 GAGCAAGGTGCAGTGGAAGAACAAGCGGTCGGCCCTGGATGAGAAGTTCTACTTGAACCT 1605871 Query 107639 AACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAA 107698 ||| || ||| || |||||| | | |||| ||||| ||||| ||||| | Sbjct 1605872 GACCCAGGATTGTCAGACCTTCAAAGAGCGGAGGAGATTCATTGGGTTCCACCTGAGCGA 1605931 Query 107699 AGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTT 107758 ||| || |||||||||| || || || ||||||||||| |||||||| || | || Sbjct 1605932 AGAGGAAGAGAACTTCCCCATCGCTTATTCCATGGTGGTCCACGAGAAGATCGAGATGTT 1605991 Query 107759 TGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGT 107818 |||| |||| ||| ||||| | | ||| ||||||||| | ||||||||||||||||| Sbjct 1605992 TGAAAGGCTCCTGAGAGCCATCTTTGCTCCTCAGAACGTTTACTGTGTCCACGTGGACAG 1606051 Query 107819 GAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGT 107878 ||||| || || ||||| || |||| ||| |||||| ||||||||| ||| || Sbjct 1606052 CAAGTCTCCCGAACCTTTCCAAAAGGCCGTCCGGGCCATCGCCTCCTGCTTCGACAACGT 1606111 Query 107879 CTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGA 107938 ||| |||| |||| || ||||| || ||||| ||||| || || ||||| || Sbjct 1606112 TTTCCTGGCTTTTAAGCAGGAGAGTGTGGTGTACGCCTCTTGGTCGAGGGTCCAAGCCGA 1606171 Query 107939 CCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATAC 107998 ||||||||| ||| | ||| |||| || ||| || | |||| |||| | ||||| || Sbjct 1606172 CCTGAACTGCATGAAGGACCTGCTTCAAAGCAAGGTCCGCTGGAGGTACCTGCTGAACAC 1606231 Query 107999 ATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTT 108058 |||||||| ||||||||||| |||||||| | ||||| |||| |||||| || || | Sbjct 1606232 CTGCGGGACCGACTTCCCCATCAAGACCAACACGGAGATCGTCCGGGCCCTGAAACTGCT 1606291 Query 108059 GAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCC---aaaaaaaaTCGCTG 108115 || || ||||||| ||||| || ||| |||||| |||| |||| || ||||| Sbjct 1606292 CAACGGGAAGAACAACATGGAATCCGAGAAACCTTC---GTCCTATAAAAGGAACCGCTG 1606348 Query 108116 GAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCC 108175 |||||||| | | || ||||| |||| | | |||| | || |||| ||| || Sbjct 1606349 GAAATACCACCACGAAGTGACCAACACCATCGTTCAGACCAAGACGACAAAGGGCCCCCC 1606408 Query 108176 CCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGT 108235 || | | | ||||||||||| || || ||||| | | ||| | | | ||||| Sbjct 1606409 GCCCCACAGCTCCCCCATGTTCACGGGCAACGCCTACATCATAGCCACCAGGGAGTTTGT 1606468 Query 108236 CCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTA 108295 || || |||| | |||| | || | || | || ||| |||||||||||| Sbjct 1606469 GCAGCACCTCTTCCAAGACCCAACCGCCAGGCGCTTGATAGAGTGGTCCAAAGACACCTA 1606528 Query 108296 TAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGT 108355 |||||||| || || || ||||||||| | || || || || |||| ||||| || Sbjct 1606529 CAGCCCCGATGAGCATCTTTGGGCCACCTTGCACCGCATGCCAGGGGTGCCCGGCTCGGT 1606588 Query 108356 TCCTAGCCACCCCAAGTATCACATCTCA--GACATGACTGCCATCGCCAGGCTCGTCAAG 108413 ||| | ||| || |||||| ||||||| ||||| ||| || | || ||| Sbjct 1606589 CCCTTATAATGACAA--ATTCGATCTCACGGACATGAACGCCATTGCCCGGGTGGTGAAG 1606646 Query 108414 TGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATC 108473 ||| ||| ||| || || ||||||| ||| || ||||| | | ||| | ||| || Sbjct 1606647 TGGGCCTACAGCGAAGGGGACGTCAGCAAGGGAGCCCCTTACCCCCAGTGCACCGGAGTC 1606706 Query 108474 CATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCAT 108533 | ||| |||| ||||| | || ||| |||||||| |||| | ||| | || Sbjct 1606707 TACCGGCGGGCGGTCTGCGTCTATGGGTTTGGGGACCTCCGCTGGCTGCTCTCACAGCAC 1606766 Query 108534 CACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAA 108593 |||||||| || |||||||| ||||| || ||||| | || ||| || ||| | ||| Sbjct 1606767 CACCTCTTCGCCAACAAGTTCGACCCCAGCGTGGACAACTGCGCCCTCCAATGCCTGGAA 1606826 Query 108594 GAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGC 108637 ||||| || || || ||||||||||| | || |||||||| Sbjct 1606827 GAGTATCTGCGCCACAAGGCCATCTACAGAACGCCCCTTTGAGC 1606870 >seq32 Length=1967196 Score = 122 bits (134), Expect = 6e-23 Identities = 235/344 (68%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||||||| ||| || |||||||| || || || |||| || | || ||| | | Sbjct 1080626 AAGAAGAAGCAGAATTTCCCATTGCGTATTCAATAGTGGCTTATCATAAAATTAATATGC 1080567 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| | || ||| || || | || || ||||| || ||||| | || || || Sbjct 1080566 TTGAGGGACTTCTGAGAACCATATACGCTCCTCAAAATTATTACTGCATTCATGTTGACA 1080507 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 ||||||||| ||| ||||| | ||||| || |||| || || || ||||||| Sbjct 1080506 AGAAGTCCCCGGAGTCTTTCTTGGCAGCGGTAAAAAGCATTGCATCATGTTTTCCCAATG 1080447 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 ||||| | ||||| |||||| || || |||||||| ||| | | || ||||||| Sbjct 1080446 TCTTCGTTGCCAGCCAGTTGGAAAGTGTAGTGTATGCCTCATGGAGCCGGGTACAAGCTG 1080387 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAG-AGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 |||| ||||| ||| | ||| | || ||| || ||| ||||||||||| | ||| Sbjct 1080386 ACCTCAACTGCATGAAGGACCT-CTACAGAAGGAATGTGAGCTGGAAGTACTTGATCAAT 1080328 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGT 108040 || || | || ||||| || ||||||||| ||||| || Sbjct 1080327 CTCTGTGGCATGGATTTCCCAATCAAGACCAATCAAGAGATTGT 1080284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348235140908820