Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1305 107 2e-18 seq2696 102 6e-17 >seq1305 Length=349135 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 45158 TTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGT 45217 ||||||||| || ||| | || ||||| || || ||||| || |||| || |||| Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767 Query 45218 TGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCC 45277 ||||| ||||| | || ||||||||| ||||| ||| || | | | | |||| Sbjct 275766 TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA 275707 Query 45278 CCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||||||||| ||| || |||||||| |||| |||||||||||||| ||||| Sbjct 275706 CTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATT 275647 Query 45338 TT 45339 || Sbjct 275646 TT 275645 >seq2696 Length=106704 Score = 102 bits (112), Expect = 6e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| |||| |||| Sbjct 61564 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCA 61505 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || ||||| | ||||||||| ||||| | || || || ||| | Sbjct 61504 GCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGA 61445 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | | |||| | ||||||||| | ||| || || || | Sbjct 61444 TTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCC 61385 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | |||| |||||||||||||| ||||| || Sbjct 61384 CGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| |||| |||| Sbjct 61792 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCA 61733 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || ||||| | ||||||||| ||||| | || || || ||| | Sbjct 61732 GCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGA 61673 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | |||| | ||||||||| | ||| || || || | Sbjct 61672 TTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCC 61613 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | |||| |||||||||||||| |||||| Sbjct 61612 CGGTCAAGGTCTTCACAAAGATCTGCATG 61584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| |||| |||| Sbjct 62712 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCA 62653 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || ||||| | ||||||||| ||||| | || || || ||| | Sbjct 62652 GCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGA 62593 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | |||| | ||||||||| | ||| || || || | Sbjct 62592 TTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCC 62533 Query 45309 CCGTCAGAGTCTTCACAAAGATTTG 45333 | |||| |||||||||||||| || Sbjct 62532 CGGTCAAGGTCTTCACAAAGATCTG 62508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395037017216530