Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2281 107 2e-18 seq898 91.5 2e-13 seq1591 86.0 8e-12 seq79 84.2 3e-11 >seq2281 Length=154634 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||||| | |||||| || || || || || ||||||| || | ||| || Sbjct 5520 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5579 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||||| || || | || ||||||||||||||||| || |||||||| ||| Sbjct 5580 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 5639 Query 33726 ATAAGTCTCTCTCC 33739 || | ||| || || Sbjct 5640 ATCACTCTTTCACC 5653 >seq898 Length=501174 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| ||| ||| |||| |||||||| || | | |||||||||||| ||||||||||| Sbjct 436011 TTCTTTAGAATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTT 435952 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| ||||| || || |||||||| | || || || || || |||||| Sbjct 435951 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTCT 435897 >seq1591 Length=275930 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| || |||||||||||||| |||||||| || | | ||| |||||| Sbjct 180114 AAGTTTTCATTGACAATTCCATCACTGGCAGCAAAAAAAGCTAGGATATGCGAAATAAAA 180055 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 34072 ||||| || |||||| |||| || ||||||| | | | ||| || || Sbjct 180054 TATTTCTCTTCTGGTTTTAGGTTGTTCCAATGAGTAAGATCCTTTGA 180008 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||||| || || || | ||| ||||| || ||||||| |||||| || | Sbjct 180589 ATCTTTGATGTAAGTGTCTATTAACAAACTGTACATCTCAGAATGAACGTTTTCTATTGA 180530 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 ||||| || || |||||||| | ||| || | |||||||||||| | ||| ||||| Sbjct 180529 TATCTGGAAGCCATAGAAACAGCGAGCTTCTGGGATCTGCACTTCTTGGCTAAAACGTTC 180470 Query 33962 T 33962 | Sbjct 180469 T 180469 >seq79 Length=1654135 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || || ||| || | || || || || ||||| | Sbjct 1264856 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCGTAGTTGGGCTCCGCAATGTGGATGT 1264797 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || || || ||||||||||| |||| ||| || ||||| || | ||| |||| Sbjct 1264796 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCGGCCGCCATCTTCAGGATGGTCT 1264737 Query 62233 TTTGTGCAATTTCCCA 62248 | || | || ||||| Sbjct 1264736 TCTGCGAGATCTCCCA 1264721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629755169330400