Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2281 111 2e-19 seq283 102 1e-16 seq79 95.1 2e-14 seq898 91.5 2e-13 >seq2281 Length=154634 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| ||||| | ||||||||| || || || || ||||||| || | ||| || Sbjct 5520 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5579 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||||| ||||| | ||||||||||| |||||||| || || ||||| ||| Sbjct 5580 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 5639 Query 36302 ATAAGTCTCTCTCC 36315 || | ||| || || Sbjct 5640 ATCACTCTTTCACC 5653 >seq283 Length=1013312 Score = 102 bits (112), Expect = 1e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| || |||| | | | | ||| ||||| |||||||||||||| || Sbjct 87430 TTACTTTTTATTAAATGCTTCTAGCAAACGGAGCAGGTGCAAAAACAGATTGATGATGTC 87489 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| || | |||||| | || | | ||| ||||| || ||||| || || |||| | Sbjct 87490 CAAATAAAGATTGATTGCAGCCAGTATATATTCTTCCGGAGAGAGTTTGTGCATTAATAG 87549 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||| ||||| || ||||| ||||| | ||| || || ||||| | ||||| Sbjct 87550 ATGAGTGTCGTAGATGATAAATCCACAGAACAGAAGCGCTCCTGCAGCAGCAAATACCAG 87609 Query 9407 CTCCACTGTTTCACTTTGCACAAATA 9432 || ||| |||| | | | ||||| Sbjct 87610 TTCTACTACTTCATTATTGAAAAATA 87635 >seq79 Length=1654135 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 ||||| | ||| || ||||||||||| || || || || || || | ||||| | ||| Sbjct 1246602 CTAAAGACTTTCTTCGTTTCTTTGTGCAGGTTGGAGACCGCGATGCGTGCGGCCAGGATG 1246543 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 || || || || | | || || ||||||||| | ||||| ||||| ||||||| | Sbjct 1246542 GCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCTGCCGTCTCGGCCGCCAGCGTGTCCAGT 1246483 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 || ||||| || || ||| | || | || ||||| |||||||| | |||| Sbjct 1246482 TCGACCGTGGTCACCCCACTGTACAGACCCTGGATCACCTTCATGGTGATTT 1246431 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || || ||| || | || || || || ||||| | Sbjct 1264856 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCGTAGTTGGGCTCCGCAATGTGGATGT 1264797 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || || || ||||||||||| |||| ||| || ||||| || | ||| |||| Sbjct 1264796 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCGGCCGCCATCTTCAGGATGGTCT 1264737 Query 65026 TTTGTGGAATTTCCCA 65041 | || | || ||||| Sbjct 1264736 TCTGCGAGATCTCCCA 1264721 >seq898 Length=501174 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 36409 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 ||| ||| ||| |||| || |||||||| | | |||||||||||| ||||||||||| Sbjct 436011 TTCTTTAGAATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTT 435952 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||| || || || || |||||||| | || || || || ||||||||| Sbjct 435951 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTCT 435897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658107558621200