Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2696 95.1 1e-14 seq1305 86.0 6e-12 >seq2696 Length=106704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| |||||| ||||| || ||| Sbjct 61781 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 61722 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | || || || ||||| ||||||||||| || |||||| || Sbjct 61721 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 61662 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | ||| | || || |||||||| || Sbjct 61661 ACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 61602 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 61601 TTCACAAAGATCTGCAT 61585 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| |||||| ||||| || ||| Sbjct 61553 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 61494 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | || || || ||||| ||||||||||| || |||||| || Sbjct 61493 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 61434 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | || || |||||||| || Sbjct 61433 ACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 61374 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 61373 TTCACAAAGATCTGCAT 61357 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| |||||| ||||| || ||| Sbjct 62701 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 62642 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | || || || ||||| ||||||||||| || |||||| || Sbjct 62641 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 62582 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | ||| | || || |||||||| || Sbjct 62581 ACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 62522 Query 139748 TTTACGAATATTTG 139761 || || || || || Sbjct 62521 TTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | || || || ||||| |||||||| ||| Sbjct 275802 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTTG 275743 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | || | ||||| | ||||||||||| | ||| | Sbjct 275742 TCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATG 275683 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || || || || ||||| Sbjct 275682 GTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 275648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496014827656000