Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2281 111 2e-19 seq1132 86.0 6e-12 seq898 86.0 6e-12 >seq2281 Length=154634 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||||| |||||||||||||| || || || | |||||||| || |||| || || Sbjct 5520 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5579 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14015 | ||||||||| || ||||| | || |||||||| ||||| || || ||||||||||| Sbjct 5580 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 5639 Query 14016 ATTAATCGTTCTCC 14029 || | || ||| || Sbjct 5640 ATCACTCTTTCACC 5653 >seq1132 Length=407820 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || ||||| ||||| |||||||||| | || | ||||||||||| || || || ||| Sbjct 174122 GACATAACACCCATCCTTTGATATTCCCCTACACGCTTTTCAAAGAAATTTGTCTTGCCT 174063 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||| || ||||| |||||||| ||||||||||| Sbjct 174062 TCCAAAGAGATATTCTCCATAAAGTCAAATGGATT 174028 >seq898 Length=501174 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 14127 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||| | ||| |||||| |||||||| ||||| ||||||||||| || || |||| Sbjct 436010 TCTTTAGAATCCTT--AATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGT 435953 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 | ||||| || ||||| || ||||| || || | ||||| | ||||||||| Sbjct 435952 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTC 435898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479680446962000