Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2281 116 5e-21 seq898 95.1 2e-14 seq79 87.8 2e-12 >seq2281 Length=154634 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| ||||| | ||||||||| || || || || ||||||| || | ||| || Sbjct 5520 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5579 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||| | ||||| | |||||||||||||||||||| || || ||||| ||| Sbjct 5580 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 5639 Query 42209 ATAAGTCTCTCTCC 42222 || | ||| || || Sbjct 5640 ATCACTCTTTCACC 5653 >seq898 Length=501174 Score = 95.1 bits (104), Expect = 2e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 42316 TTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 ||| ||| ||| |||| || ||||| || | | |||||||||||||||||||||||| Sbjct 436011 TTCTTTAGAATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTT 435952 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||| | ||| || || | ||||||||| Sbjct 435951 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTCT 435897 >seq79 Length=1654135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || || ||| ||| | || || || ||||| || | Sbjct 1264856 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCGTAGTTGGGCTCCGCAATGTGGATGT 1264797 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || || ||||||||||| |||| ||| || ||||| || | ||| |||| Sbjct 1264796 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCGGCCGCCATCTTCAGGATGGTCT 1264737 Query 70988 TTTGTGGAATTTCCCA 71003 | || | || ||||| Sbjct 1264736 TCTGCGAGATCTCCCA 1264721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671072673326800