Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq750 172 1e-37 seq2696 159 8e-34 seq1305 131 4e-25 seq1591 96.9 8e-15 seq1132 86.0 1e-11 seq898 84.2 5e-11 >seq750 Length=573183 Score = 172 bits (190), Expect = 1e-37 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| ||||||||||| || || || |||||||| || || || || || || ||||||| Sbjct 118268 GAGCTTTATGGTGGTACTACATATCAAAAGGAATTGAGTATCTGGACACAATATTCTTCA 118209 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 ||||| ||||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct 118208 TCCTAAGAAAGAAATTTAACCAAATCAGTTTTCTTCATGTCTATCACCATTTCACTATGT 118149 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 ||||||| | ||| | || || |||||| | ||||||||||||| Sbjct 118148 TTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACAAG 118104 >seq2696 Length=106704 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || |||||| Sbjct 61586 ATGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 61527 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||| || || || |||||||| || | |||||||| |||||| Sbjct 61526 GAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGA 61467 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| || || || || ||||| || | ||| || || || || Sbjct 61466 GGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 61407 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||||||| || || || || || || | || || ||||| ||||||||||| Sbjct 61406 ACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| ||||| | |||||| Sbjct 61796 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 61737 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || | |||||||| |||||||| || |||||||||||| Sbjct 61736 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 61677 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || |||||||| | ||| || || || || |||||||| || || || Sbjct 61676 TGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 61617 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || ||||| |||||||| Sbjct 61616 TTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| ||||| | |||||| Sbjct 62716 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 62657 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || | |||||||| |||||||| || |||||||||||| Sbjct 62656 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 62597 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || |||||||| | ||| || || || || |||||||| || || || Sbjct 62596 TGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 62537 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTG 104556 || || || | || || ||||| ||||| Sbjct 62536 TTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 131 bits (144), Expect = 4e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||| || || || | || ||||| || || || || ||||| || ||||||||| Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 || || ||||| || ||||| || ||||| || || || || ||||| || | ||| || Sbjct 275766 TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA 275707 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| || || || ||||| ||||| | ||| || ||||| ||||||||| Sbjct 275706 CTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATT 275647 Query 104561 TT 104562 || Sbjct 275646 TT 275645 Score = 113 bits (124), Expect = 1e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || |||||||| || || |||||| Sbjct 265709 ATGCCTCCCCTCAGACGGAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCA 265650 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||||| || ||||||||||| || ||||||||||| || ||| Sbjct 265649 GAGAGAGTGCGGCCATCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGA 265590 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 || || |||||||| ||||| || || || || || Sbjct 265589 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCAC 265555 >seq1591 Length=275930 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||||| || ||||| | ||||| || || ||||||||| | |||||||| Sbjct 180482 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTCCAGATATCAATAGAAAAC 180541 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||||| |||||||||||| | |||||||| ||||| || Sbjct 180542 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACTTACAT 180582 >seq1132 Length=407820 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 269494 TGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGA 269553 ||| ||||| ||| |||||||||||||| || || ||||| ||| | |||||||| || Sbjct 174024 TGAGAATCCATTTGACTTTATGGAGAATATCTCTTTGGAAGGCAAGACAAATTTCTTTGA 174083 Query 269554 GAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTT 269613 ||||| ||| | | ||||| | |||||||| ||||| | | | ||| || || Sbjct 174084 AAAGCGTGTAGGGGAATATCAAAGGATGGGTGTTATGTCAAGTTCTGCAGATAACTCGTT 174143 Query 269614 CACTACAGATGCAGAATTCTAA 269635 |||| || ||||| |||||| Sbjct 174144 CACTTTGGACGCAGATTTCTAA 174165 >seq898 Length=501174 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| ||| | ||||| ||||| || | |||||| | ||||| || || | Sbjct 435875 TCTAGGTGGAGCGGTTTAGCCAAGAAGTACAAATCACAGAAGCCCGCTGTTTCTATGGCT 435934 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || || || ||||||||||| ||||| ||| || | || |||||||| | Sbjct 435935 TCCAGATTGCCATGGAGAACATTCATTCAGAAATGTATAGTTTACTCATTGATACTTACA 435994 Query 269016 T 269016 | Sbjct 435995 T 435995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151281414324440