Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq457 127 3e-24 >seq457 Length=778413 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 |||||||||||| | || ||| ||||||||| ||||| | ||| |||| || || || Sbjct 759886 GTCTGAAACAGTCGCTCATCATCCCATTCTGGGTGTTCGCCTTTAAGAATGTCACAGACC 759945 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | || ||||||| |||||| | || || |||||||| || || || |||| |||||| Sbjct 759946 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 760005 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || |||| | || || || || || | ||| ||||||||||| | Sbjct 760006 ACCTCCTGTCCTACAGAAAATTTCAGATGGTCAGGGACGTGGGGTGGATAGATCATTTCT 760065 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||| ||||| || | || ||||||||||| || |||| ||||| Sbjct 760066 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCCCCAGCAATCATCTG 760115 Score = 105 bits (116), Expect = 9e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | || || || || || || |||||||| | || ||||||||||||| Sbjct 737704 CAAAGCCCACTGCGCCTCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGT 737763 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | | | || ||||| | ||| || |||||||| || || | ||| |||| || |||| Sbjct 737764 TTCCTAGAAGACCTTTCAAGGAGAAGGGAGCCCCGAGTTCAATCATGGTCTCGCCAAAGA 737823 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCA-AGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 |||| || || || ||||| | | | | |||| ||| || |||| ||| || || Sbjct 737824 TGGCTCCAGGGCGTGGTTTTTCAATGAGAAGAGCCGG-GTATAATTCCATAGCATCAATA 737882 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| || || | ||||| |||| ||||| ||||| ||||| Sbjct 737883 TCTCCATAGAGCTCTTCAAGTTCTCCAGCCATTTCTTTTTCACCTGT 737929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708454567479200