Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26]
7,930 sequences; 1,424,897,867 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq457 127 3e-24
>seq457
Length=778413
Score = 127 bits (140), Expect = 3e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
|||||||||||| | || ||| ||||||||| ||||| | ||| |||| || || ||
Sbjct 759886 GTCTGAAACAGTCGCTCATCATCCCATTCTGGGTGTTCGCCTTTAAGAATGTCACAGACC 759945
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
| || ||||||| |||||| | || || |||||||| || || || |||| ||||||
Sbjct 759946 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 760005
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || |||| | || || || || || | ||| ||||||||||| |
Sbjct 760006 ACCTCCTGTCCTACAGAAAATTTCAGATGGTCAGGGACGTGGGGTGGATAGATCATTTCT 760065
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863
|||| ||||| || | || ||||||||||| || |||| |||||
Sbjct 760066 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCCCCAGCAATCATCTG 760115
Score = 105 bits (116), Expect = 9e-18
Identities = 161/227 (71%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810
|||| ||||| | || || || || || || |||||||| | || |||||||||||||
Sbjct 737704 CAAAGCCCACTGCGCCTCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGT 737763
Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870
| | | || ||||| | ||| || |||||||| || || | ||| |||| || ||||
Sbjct 737764 TTCCTAGAAGACCTTTCAAGGAGAAGGGAGCCCCGAGTTCAATCATGGTCTCGCCAAAGA 737823
Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCA-AGAATCCGGTGTACAACTCCACAGCCTCGATG 8929
|||| || || || ||||| | | | | |||| ||| || |||| ||| || ||
Sbjct 737824 TGGCTCCAGGGCGTGGTTTTTCAATGAGAAGAGCCGG-GTATAATTCCATAGCATCAATA 737882
Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
||||| || || | ||||| |||| ||||| ||||| |||||
Sbjct 737883 TCTCCATAGAGCTCTTCAAGTTCTCCAGCCATTTCTTTTTCACCTGT 737929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708454567479200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |