Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2696 111 1e-19 seq1305 100 3e-16 seq3172 86.0 6e-12 >seq2696 Length=106704 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||| | || || |||| |||| || | || | || || ||||| || | | Sbjct 61823 AAAGTTTAAAAACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATG 61764 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || | |||| | || |||||||| || || ||||||| ||||| || Sbjct 61763 TTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGT 61704 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || |||||||| |||||||| || | ||||| |||||||| | | |||||| Sbjct 61703 TGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCA 61644 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | ||||||||||| || || | || |||||||||||||||||| Sbjct 61643 CTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATG 61584 Query 95009 C 95009 | Sbjct 61583 C 61583 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| ||||| || || || |||||||| |||||||| Sbjct 61511 TCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTA 61452 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||||| | | |||||| | | || || || | |||||| Sbjct 61451 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATG 61392 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || | || ||||||||||||||||| Sbjct 61391 GTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61357 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||| | || || |||| |||| || | || | || || ||||| || | | Sbjct 62743 AAAGTTTAAAAACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATG 62684 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || | |||| | || |||||||| || || ||||||| ||||| || Sbjct 62683 TTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGT 62624 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || |||||||| |||||||| || | ||||| |||||||| | | |||||| Sbjct 62623 TGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCA 62564 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 | | || || || | ||||||||||| || || | || |||||||||||||| Sbjct 62563 CTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || ||| ||||||| | || || || ||||||||||| ||||| || Sbjct 275803 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTT 275744 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | ||||| ||||| || | | |||||| | ||| || || || | |||| Sbjct 275743 GTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA-CTTGGCTCCACCTCCAGGGTGA 275685 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | || ||||||||||||||||| Sbjct 275684 TGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 275648 >seq3172 Length=68839 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGT 94961 |||||| ||||| | ||||||||||||||| | | |||||| | ||| || || | Sbjct 26900 ACCTTCCTTGTCCTGAATTTTTGCCTTGACATTTTCAATTGTGTCA-CTTGGCTCCACCT 26842 Query 94962 CAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct 26841 CAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 26796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246763134800