Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq572 196 8e-46 seq489 187 4e-43 seq189 158 2e-34 seq1856 132 8e-27 seq3994 116 6e-22 seq28 95.1 2e-15 >seq572 Length=681567 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | |||||||||||||| || || |||||||| ||||| Sbjct 640891 CGCTAAGCGTCACCGCAAAGTGTTGCGAGATAACATCCAGGGCATTACCAAGCCCGCTAT 640832 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| ||||| |||||| |||| || ||| |||| || |||| Sbjct 640831 CCGCCGTTTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCCGGCTTGATCTACGAGGAGAC 640772 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| |||| || ||| || |||| ||||| | || ||||| Sbjct 640771 TCGCGGGGTGCTGAAGGTCTTTCTGGAGAATGTCATCCGCGATGCCGTGACTTACACCGA 640712 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || |||||||| | |||||||| |||||||| ||||| Sbjct 640711 GCACGCCAAGAGAAAGACCGTGACAGCCATGGATGTGGTCTATGCCTTGAAACGCCAAGG 640652 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || || ||||| Sbjct 640651 CCGTACCCTCTACGGATTCGGGGGTTAA 640624 >seq489 Length=747913 Score = 187 bits (206), Expect = 4e-43 Identities = 198/261 (76%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||| | | || || |||||||||||||| ||||||||||| ||||| Sbjct 614019 CGCCAAGAGGCATCGGAAAGTGCTCCGCGATAACATCCAAGGCATCACCAAGCCTGCTAT 613960 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| |||||||| || |||||| | || || ||| | || ||||||| Sbjct 613959 ACGCCGTCTGGCTCGCCGTGGTGGCGTGAAGCGTATTTCGGGCTTGATTTACGAAGAGAC 613900 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| |||| | ||| ||||| | |||||| | ||| ||||| Sbjct 613899 TCGCGGTGTGCTGAAGGTCTTTTTAGAGAATGTTATTCGGGATGCTGTGACCTACACCGA 613840 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| || | |||||| | || ||||| |||||||| ||||| Sbjct 613839 GCACGCGAAGCGAAAGACTGTAACTGCTATGGATGTTGTGTATGCTTTGAAACGCCAAGG 613780 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || |||||||| Sbjct 613779 ACGCACTCTGTACGGTTTTGG 613759 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||| | ||||| | ||||| |||||||||||||| || |||||||| ||||| Sbjct 609330 CGCTAAGAGGCATCGGAAGGTGCTTCGCGATAACATCCAAGGCATTACCAAGCCTGCTAT 609271 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| | ||||| ||||| ||||| |||||| | ||||| ||| |||||||||| | Sbjct 609270 TCGCCGTTTAGCTCGCCGTGGGGGAGTAAAGCGTATTTCTGGCTTGATCTATGAAGAAAC 609211 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || || | | |||||| | ||| || | ||| || || Sbjct 609210 TCGAGGCGTGCTGAAGGTTTTTCTGGAAAACGTTATTCGTGACGCCGTGACCTACACGGA 609151 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||||| ||||| || || | |||||| |||| ||||| |||||||| ||||| Sbjct 609150 GCATGCAAAACGAAAGACCGTGACTGCGATGGATGTCGTTTATGCCTTGAAACGCCAAGG 609091 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || ||| | ||| Sbjct 609090 TCGTACTCTGTACGGCTTCGGAGGCTAA 609063 Score = 150 bits (166), Expect = 3e-32 Identities = 181/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||| ||||| || || || || ||||||||||||| Sbjct 627193 CTTCGCGACAACATCCAGGGCATCACGAAGCCTGCCATTCGCCGCTTGGCTCGTCGTGGC 627134 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || | |||||||||||| || | || || ||| |||| Sbjct 627133 GGAGTGAAGCGGATCTCCGGGCTCATCTATGAAGAGACCCGAGGCGTCTTAAAGGTCTTT 627074 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| |||||||| ||||| | ||| |||||||| || || | |||||||| Sbjct 627073 TTGGAGAACGTTATCCGGGATGCCGTTACCTACACCGAGCATGCCAAGAGGAAGACTGTG 627014 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| |||| ||||| |||||||| || || || | | || |||||||| Sbjct 627013 ACTGCTATGGACGTCGTTTATGCTTTGAAACGCCAGGGTCGCACCTTGTACGGTTTTGGT 626954 Query 16694 AGTTAA 16699 ||||| Sbjct 626953 GGTTAA 626948 >seq189 Length=1196477 Score = 158 bits (174), Expect = 2e-34 Identities = 183/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||| ||||| |||||||| ||| ||||||| || || Sbjct 793999 CTCCGCGACAACATCCAAGGCATCACGAAGCCGGCTATCCGCCGTTTGGCTCGCCGCGGA 793940 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| ||| |||| ||||||| |||| || |||||| | || Sbjct 793939 GGGGTGAAGCGAATCTCTGGCTTGATCTACGAAGAGACCCGTGGCGTGTTGAAGGTTTTT 793880 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||||| | || ||||||||||| || | ||||| || Sbjct 793879 CTCGAGAACGTGATCCGCGATGCCGTGACTTACACCGAGCACGCCAAGAGGAAGACCGTG 793820 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| | || || || ||||||| ||||| || | | || || ||||| Sbjct 793819 ACCGCCATGGACGTGGTGTACGCGCTGAAACGCCAAGGTCGCACCTTGTACGGCTTTGGG 793760 Query 16694 AGTTAAT 16700 | |||| Sbjct 793759 GGCTAAT 793753 >seq1856 Length=223512 Score = 132 bits (146), Expect = 8e-27 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || ||||| ||||| || || ||||| |||||||| || || Sbjct 168768 TCTCCGGGATAACATCCAGGGCATCACGAAGCCCGCCATTCGTCGGCTGGCTCGGCGCGG 168709 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || |||||||| | || || | |||| ||||||| || | || |||| | || Sbjct 168708 GGGCGTCAAGCGGATTTCGGGGCTCATCTACGAAGAGACGCGGGGCGTCCTGAAAGTGTT 168649 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || |||| || || | ||| ||||||||||| || | ||||| || Sbjct 168648 CCTGGAGAATGTGATCCGCGACGCGGTGACCTACACCGAGCACGCCAAGAGGAAGACGGT 168589 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | ||||| || |||| || |||||||| | |||| || || || Sbjct 168588 CACGGCCATGGATGTGGTCTACGCCCTGAAGCGCCAAGGCCGGACTCTTTACGGCTTCGG 168529 Query 16693 AAGTTAAT 16700 | |||| Sbjct 168528 CGGCTAAT 168521 >seq3994 Length=24899 Score = 116 bits (128), Expect = 6e-22 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||| | || |||| | ||||| || |||||||| || ||||||||||| || || Sbjct 6437 CGCTAAGAGGCACCGCAAAGTCCTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 6496 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || |||||| | || || || |||| || |||| Sbjct 6497 CCGCCGTCTGGCTCGCCGCGGAGGCGTGAAGCGTATTTCAGGCCTGATCTACGAGGAGAC 6556 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 ||| | || |||||| ||||||| ||| ||| || | || ||| || Sbjct 6557 TCGCGGCGTCTTGAAGGTCTTCCTGGAGAACGTGATTCGCGACGCTGTC 6605 >seq28 Length=1995106 Score = 95.1 bits (104), Expect = 2e-15 Identities = 146/209 (70%), Gaps = 11/209 (5%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||| || | || | || ||||||| ||| ||| Sbjct 947139 CTTCGTGATAACATCCAGGGTATCACCAAGTCACCAATTCATCATCTGGCTTGTCATGGA 947080 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || | |||| | | || || || || | | | || | ||||| ||||| Sbjct 947079 GGCATGAAGCATATTTCAGGCCTGATC--TTATGGCATCC---------TGAAGGTCTTC 947031 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || || ||||||| || |||||||||||| || || | |||| ||| Sbjct 947030 CTGGAGAATGTGATTCATGATGTCGTCACCTATACCGAGCATGCCAAGAGGAAGATGGTC 946971 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||||| || ||||| || ||||| Sbjct 946970 ACTGCCATGGACATTGTCTACGCCTTGAA 946942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067949545490