Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1132 98.7 1e-15 seq471 86.0 7e-12 >seq1132 Length=407820 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| || || || | ||| |||||| | ||||||||| ||||| Sbjct 174166 TTTAGAAATCTGCGTCCAAAGTGAACGAGTTATCTGCAGAACTTGACATAACACCCATCC 174107 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || | || | ||||| || ||||||||||| |||||||| || ||| | Sbjct 174106 TTTGATATTCCCCTACACGCTTTTCAAAGAAATTTGTCTTGCCTTCCAAAGAGATATTCT 174047 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 ||||||| ||||||||||| |||| || ||||| Sbjct 174046 CCATAAAGTCAAATGGATTCTCAGCCTTGAATAT 174013 >seq471 Length=764654 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 153577 ATCACGGATATCTATATATTCAATTTAGCAATTTCTGATTTAATATTTGTTATAGATTTC 153636 || || ||||| ||| || ||||| | || || |||||||| | |||||| | | | | Sbjct 649448 ATGACAGATATTTATGTACTCAATCTTGCCATATCTGATTTGCTTTTTGTTCTTGGTCTT 649389 Query 153637 CCATTCATAATCTATAATGA-GTTTGATCAATGGATATTTGGTGATTTTATGTGTAAAGT 153695 || || | ||| | | | |||| |||||||||||| ||| | |||||||||| Sbjct 649388 CCTTTT-TGGTCTTACTTCATGGCTGATAGATGGATATTTGGAGATACTTTGTGTAAAGT 649330 Query 153696 AATTTC-TGTATCTTATTATATAGGATTTTTTAGTAATATGTTTTTGATTACATTAATGA 153754 || || || ||||| | || |||||||| ||| || ||||| || | || |||| Sbjct 649329 AAGCTCTTGGATCTT-CCAGATTGGATTTTTCAGTGGAATCTTTTTTATCATGTTCATGA 649271 Query 153755 GTATAGATAGATATTTTGCAATT 153777 |||| ||||| ||| |||| ||| Sbjct 649270 GTATTGATAGGTATCTTGCTATT 649248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531848075333200