Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2281 120 4e-22 seq898 96.9 4e-15 seq1591 84.2 3e-11 seq79 84.2 3e-11 >seq2281 Length=154634 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| ||||| ||||||||||| || || || || ||||||| || | ||| || Sbjct 5520 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5579 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||||| || || | |||||||||||||||||||| || |||||||| ||| Sbjct 5580 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 5639 Query 33448 ATAAGTCTCTCTCC 33461 || | ||| || || Sbjct 5640 ATCACTCTTTCACC 5653 >seq898 Length=501174 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 33555 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 ||| ||| ||| |||| |||||||| || | | |||||||||||| ||||||||||| Sbjct 436011 TTCTTTAGAATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTT 435952 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || ||||| ||||| || || |||||||| | || || || || ||||||||| | Sbjct 435951 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTCTTGGCT 435892 Query 33675 AAATCGTTCCGCC 33687 ||| || ||| || Sbjct 435891 AAACCGCTCCACC 435879 >seq1591 Length=275930 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| |||||||| || ||||| |||||||| |||||||| || | | ||| |||| Sbjct 180116 CCAAGTTTTCATTGACAATTCCATCACTGGCAGCAAAAAAAGCTAGGATATGCGAAATAA 180057 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 33794 ||||||| || |||||| |||| || ||||||| | | | ||| || || Sbjct 180056 AATATTTCTCTTCTGGTTTTAGGTTGTTCCAATGAGTAAGATCCTTTGA 180008 >seq79 Length=1654135 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || || ||| || | || || || || ||||| | Sbjct 1264856 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCGTAGTTGGGCTCCGCAATGTGGATGT 1264797 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || || || ||||||||||| |||| ||| || ||||| || | ||| |||| Sbjct 1264796 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCGGCCGCCATCTTCAGGATGGTCT 1264737 Query 62182 TTTGTGGAATTTCCCA 62197 | || | || ||||| Sbjct 1264736 TCTGCGAGATCTCCCA 1264721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622885450358800