Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2696 91.5 1e-13 >seq2696 Length=106704 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || || || || || ||| | || ||| | || || ||| || Sbjct 61354 AAAATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 61413 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||| ||| | ||||| || || || ||||||||||| ||||| || Sbjct 61414 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGAC 61473 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||||||| |||| | | |||||||| || ||||| Sbjct 61474 CAACAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGA 61511 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || ||| | || ||| | || || ||| ||| Sbjct 61585 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61644 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || || || ||||||||||| ||||| || ||| Sbjct 61645 GACACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61704 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||| |||| | | |||||||| || ||||| Sbjct 61705 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGA 61739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429894448029150