Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2696 118 9e-22 seq1305 109 5e-19 >seq2696 Length=106704 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| |||||||| ||| ||||||| | || |||||| | Sbjct 61356 AATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAG 61415 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| |||||| || |||||||| ||||| |||||||| Sbjct 61416 TGACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCA 61475 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| ||||| || | ||||| | |||||| | || ||||| Sbjct 61476 ACAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAA 61535 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 61536 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 61568 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| ||| ||||||| | || |||||| | | Sbjct 61585 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61644 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| || |||||||| ||||| ||||||||| Sbjct 61645 GACACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61704 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| ||||| || | ||||| | |||||| | || ||||| Sbjct 61705 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAAC 61764 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 61765 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 61796 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || ||||| ||||| |||||||| ||| ||||||| | || |||||| | |||| Sbjct 62508 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGTGAC 62567 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || || || | ||| |||||| || |||||||| ||||| |||||||||||| Sbjct 62568 ACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAACAG 62627 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 | | || ||||| ||||| || | ||||| | |||||| | || ||||| || Sbjct 62628 AGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAACATC 62687 Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || ||| | || || Sbjct 62688 CAGAAGGAGTCCACCCTCCATCTTGTCCT 62716 >seq1305 Length=349135 Score = 109 bits (120), Expect = 5e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || ||||| ||||| ||||| || || ||||||| | || |||||| | Sbjct 275644 AAAAATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCCTGGAGGTGGAGCC 275703 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| ||||| |||||| ||||| ||||| ||||| || || Sbjct 275704 AAGTGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGA 275763 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||||||| || | || ||||||||||| || | ||||||| ||||| Sbjct 275764 CCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCAC 275811 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134 ||||| |||||| ||||||||||| ||||| || ||||||||| || | || |||| Sbjct 265556 TGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAACAGAGGCTGATCTTTG 265615 Query 25135 CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCA 25194 | || || || |||||||||| |||||| | || ||||| || || ||||| |||| Sbjct 265616 CTGGAAAGCAGTTAGAAGATGGCCGCACTCTCTCTGACTACAACATCCAGAAAGAGTCCA 265675 Query 25195 CGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 | || ||| | || || | || || ||||| | ||| Sbjct 265676 CTCTCCATCTTGTCCTCCGTCTGAGGGGAGGCATTTA 265712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433286120202950