Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1305 100 2e-16 >seq1305 Length=349135 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || || || || || || |||| || || ||||| | Sbjct 275644 AAAAATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCCTGGAGGTGGAGCC 275703 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || ||| | || || | || ||||| || |||||||| || ||||| || || Sbjct 275704 AAGTGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGA 275763 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||| | || || ||||||||||| ||| | || ||| ||||||| ||||||| || Sbjct 275764 CCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 275823 Query 22395 CAA 22397 ||| Sbjct 275824 CAA 275826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419687434600450