Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2696 143 5e-29 seq1305 136 7e-27 seq3172 87.8 3e-12 >seq2696 Length=106704 Score = 143 bits (158), Expect = 5e-29 Identities = 158/209 (76%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | || ||||| | Sbjct 61564 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCA 61505 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || | ||| |||||||| || ||||||||||| || || || | Sbjct 61504 GCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGA 61445 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || |||||||| ||| |||||||| | || || || | |||||||||||| | Sbjct 61444 TTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCC 61385 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | |||||| || || ||||||||| Sbjct 61384 CGGTCAAGGTCTTCACAAAGATCTGCATT 61356 Score = 138 bits (152), Expect = 2e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | || ||||| | Sbjct 61792 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCA 61733 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || | ||| |||||||| || ||||||||||| || || || | Sbjct 61732 GCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGA 61673 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || |||||||| || |||||||| | || || || | |||||||||||| | Sbjct 61672 TTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCC 61613 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||| || || |||||||| Sbjct 61612 CGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 132 bits (146), Expect = 9e-26 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | || ||||| | Sbjct 62712 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCA 62653 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || | ||| |||||||| || ||||||||||| || || || | Sbjct 62652 GCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGA 62593 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || |||||||| || |||||||| | || || || | |||||||||||| | Sbjct 62592 TTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCC 62533 Query 68434 CCGTGAGGGTCTTGACGAATATCTG 68458 | || | |||||| || || ||||| Sbjct 62532 CGGTCAAGGTCTTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 136 bits (150), Expect = 7e-27 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 68283 TTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGT 68342 || || |||||||| || | |||||||| | |||||| ||||| || || || || ||| Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767 Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || ||||||||||||||||| || || || ||||| || ||| |||||||| Sbjct 275766 TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA 275707 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || |||| ||||||||| || || || | ||||| || || ||||||||| Sbjct 275706 CTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATT 275647 Score = 123 bits (136), Expect = 5e-23 Identities = 110/137 (80%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| |||||||| || || ||||| || | |||||||||| Sbjct 265687 CAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTA 265628 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||||| || || || || || || |||||||| || ||||||||||| ||||| || | Sbjct 265627 ACTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCCTGGA 265568 Query 68374 TCTTTGCCTTGACGGCC 68390 | || ||||| || ||| Sbjct 265567 TTTTGGCCTTCACNGCC 265551 >seq3172 Length=68839 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| ||||||||||| || || ||||| || || || || Sbjct 26899 CCTTCCTTGTCCTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTCA 26840 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | |||||||||||| || |||||||| || || || ||||||||| || Sbjct 26839 AGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCATTGTG 26792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921531044179600