Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2696 91.5 1e-13 >seq2696 Length=106704 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || ||||| || || || ||| Sbjct 61781 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 61722 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||||||||| ||||||||||||||||| || || || || Sbjct 61721 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 61662 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || || | ||| | ||||| ||||||| || Sbjct 61661 ACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 61602 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 61601 TTCACAAAGATCTGCATG 61584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || ||||| || || || ||| Sbjct 61553 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 61494 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||||||||| ||||||||||||||||| || || || || Sbjct 61493 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 61434 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | ||||| ||||||| || Sbjct 61433 ACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 61374 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 61373 TTCACAAAGATCTGCAT 61357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || ||||| || || || ||| Sbjct 62701 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCA 62642 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||||||||| ||||||||||||||||| || || || || Sbjct 62641 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTG 62582 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || || | ||| | ||||| ||||||| || Sbjct 62581 ACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 62522 Query 114366 TTTACAAAAATCTG 114379 || ||||| ||||| Sbjct 62521 TTCACAAAGATCTG 62508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420093795323160