Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq79 156 8e-33 >seq79 Length=1654135 Score = 156 bits (172), Expect = 8e-33 Identities = 140/176 (80%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1258313 CCACCTCCTCCTGGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 1258254 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| ||||| Sbjct 1258253 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCG 1258194 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 ||| ||||| ||||| ||| || | || |||||| | | ||||| ||| Sbjct 1258193 TCCCTGTCTCCGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACC 1258138 Score = 156 bits (172), Expect = 8e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 244326 TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC 244385 |||||||||||||||||| ||||||| |||||| |||| | |||| |||| |||| Sbjct 1260461 TGCTGACGGGGCTGCCCTGGTAGGTCTCGTAGGGCCCGTACTCCCGGGCGAGCTGGCAGC 1260402 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-GGGCC 244444 | | || ||||| |||||||||||||||||||||| || ||| | | || ||||| Sbjct 1260401 TGGCCTCCAGGGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGA-GCAGCTGGGCC 1260343 Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || |||||||| | ||| | |||||| |||||||||| |||||||| || Sbjct 1260342 TCGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACCCCA 1260283 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||||| ||||| | ||| |||||||||||| Sbjct 1260282 ATGCCAATGGGGCGGTGGCGCTTGTTGGAG 1260253 Score = 132 bits (146), Expect = 9e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | |||||||||||| ||||||||||| || | ||| ||||||| | ||||||| Sbjct 1256915 ACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAAAGGTCCCGAGCCCTCTGC 1256856 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| || | || ||||||| ||||| |||||||||| Sbjct 1256855 TCCTCCTTCCCCGTGTTCTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAGTGCCAGGGC 1256796 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| |||| ||| ||||| Sbjct 1256795 TCCAAGTAGATGGCGAAGGCCCCGGG 1256770 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || |||||| |||||||||||||||| ||||| | |||| || || ||||| | | || Sbjct 1264801 GATGTTGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCGGCCGCCATCTTCAGGAT 1264742 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| || ||||| || |||||||||||| |||| | || |||||| | | | Sbjct 1264741 GGTCTTCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTC 1264682 Query 243994 TTCGATGTTCTG 244005 ||| ||||| Sbjct 1264681 CGGGATATTCTG 1264670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944245592376800