Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2696 125 2e-23 seq1305 105 2e-17 >seq2696 Length=106704 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | ||| ||||| |||||| Sbjct 61796 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 61737 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || ||||||| | |||||| | || || |||||||||||| Sbjct 61736 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 61677 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| || || || ||||| || | || || | || || || || ||||| || Sbjct 61676 TGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 61617 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||| ||||| || || |||||||| Sbjct 61616 TTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | ||| || || ||||| || |||| Sbjct 61587 CATG-CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 61529 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| |||||||| | || || || || ||||||| | |||||| | Sbjct 61528 CAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAG 61469 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || |||||||||||||||||||| || || || || || || | || || | | Sbjct 61468 GAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCT 61409 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || || ||||| || |||||||||| ||||| || || ||||||||| Sbjct 61408 CCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 61356 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | ||| ||||| |||||| Sbjct 62716 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 62657 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || ||||||| | |||||| | || || |||||||||||| Sbjct 62656 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 62597 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| || || || ||||| || | || || | || || || || ||||| || Sbjct 62596 TGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 62537 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTG 288470 |||||||||| ||||| || || ||||| Sbjct 62536 TTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 105 bits (116), Expect = 2e-17 Identities = 134/183 (73%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||||| ||| ||||| || ||||| | || || || || |||||||| | |||| Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767 Query 288355 TGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || ||||| || ||||| || ||||||||||| || ||||| || || || | Sbjct 275766 TGG---TCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTG 275710 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || || | || || || || ||||| ||||| || |||| ||||| || || |||||| Sbjct 275709 TCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGC 275650 Query 288472 ATT 288474 ||| Sbjct 275649 ATT 275647 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/140 (76%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||||| ||||| || ||||| | ||| ||||| || ||| Sbjct 265691 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 265632 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 ||||| || ||||| || |||||||| | |||||| ||||| || |||||||| Sbjct 265631 TCTAACTGCTTTCCAGCAAAGATCAGCCTCTGTTGG---TCTGGAGGAATGCCTTCTTTG 265575 Query 288379 TCCTGGATTTTCGCTTTCAC 288398 ||||||||||| || ||||| Sbjct 265574 TCCTGGATTTTGGCCTTCAC 265555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179534543426540