Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2696 111 2e-19 seq113 89.7 6e-13 seq3994 87.8 2e-12 seq1856 87.8 2e-12 >seq2696 Length=106704 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||| || | ||| | ||| |||||| || || ||||| |||| Sbjct 61583 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 61524 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || |||||||| ||||| || || | || ||| ||||| | || Sbjct 61523 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 61464 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || || ||| |||||| |||| || | | ||||| || | ||||| Sbjct 61463 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 61404 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | ||||||||||| || || | ||||| |||||||| ||||||||| Sbjct 61403 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTTC 61353 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| || | ||| | ||| |||||| || || ||||| |||| Sbjct 61812 ACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 61753 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || |||||||| ||||| || || | || ||| ||||| | || Sbjct 61752 GAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGG 61693 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || || ||| |||||| |||| | | | ||||| || | ||||| Sbjct 61692 AATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCAC 61633 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 61632 CTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| || | ||| | ||| |||||| || || ||||| |||| Sbjct 62732 ACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 62673 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || |||||||| ||||| || || | || ||| ||||| | || Sbjct 62672 GAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGG 62613 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || || ||| |||||| |||| | | | ||||| || | ||||| Sbjct 62612 AATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCAC 62553 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTG 42205 || | ||||||||||| || || | ||||| |||||||| || Sbjct 62552 CTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTT----CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAG 57047 ||| | |||||| || |||| || | | |||||||||| ||||||||||||||||| Sbjct 59505 TTTTTAAAAAATATTGGGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAG 59446 Query 57048 GCGGACATACTCACCACTATACTACCGAGGA 57078 |||| ||||| |||||||||||| |||||| Sbjct 59445 GCGGGGATACTTACCACTATACTAACGAGGA 59415 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 57816 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 57757 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 57756 TACTAACGAGGA 57745 >seq113 Length=1446452 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||| | ||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 310951 AAAAATCGTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 310892 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 310891 ACTTACCACTATACTAACGAGGA 310869 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1378891 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1378950 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 1378951 TATACTAACGAGGA 1378964 >seq3994 Length=24899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 19588 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 19529 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 19528 ATACTAACGAGGAATG 19513 >seq1856 Length=223512 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 154670 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 154611 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 154610 ATACTAACGAGGA 154598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543158954031200