Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq79 95.1 1e-14 >seq79 Length=1654135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || |||||||| |||||||| || |||||||| ||||| | || ||||||||||| Sbjct 1261134 CTCCTGGTGGCCCCGATGCCCACAGCTTCCACGGCTCAGATTTTGGGGAACAACGAGTCC 1261193 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209 | ||||||| |||| |||| | |||| | | ||||| ||| | ||||| |||| Sbjct 1261194 GTGGAACCCTACACCAGCAACATCTACACCCGCCGGGTCCTCTCGGGGGAGTTCC 1261248 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 |||||||||| ||||||||| || ||||| ||| | |||||| ||||||| |||| ||| Sbjct 1255107 ACCAATGGCAACTCCAACGGGCTGGTCCCCATGTTGAGGGTCTACAACAACACGGCTCGC 1255166 Query 94144 TACGTGGACCAGGGTGG 94160 ||||||||||| || || Sbjct 1255167 TACGTGGACCAAGGGGG 1255183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 95300 CCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGG 95359 || ||||||| |||||| | || || |||||| | ||| |||||||||||| ||||||| Sbjct 1264665 CCTTCCAGAATATCCCGGAGATTCCCGAGGACTTGAAGCAGCTCTACAAGACGGTGTGGG 1264724 Query 95360 AGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGA 95419 ||||| ||||| || || | ||||||| ||| ||| |||||||| ||||| Sbjct 1264725 AGATCTCGCAGAAGACCATCCTGAAGATGGCGGCCGACCGGGGGGCCTTCATCGACCAGA 1264784 Query 95420 G 95420 | Sbjct 1264785 G 1264785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494674160562800