Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq457 147 3e-30 >seq457 Length=778413 Score = 147 bits (162), Expect = 3e-30 Identities = 204/283 (72%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 || || |||||||| ||| |||| |||| |||| | || || ||||| ||||| Sbjct 737646 GGGCAGCCCTTCACGTTGTTGCAAACGAGGCTTTGAAGTGAGGCTGTATTCACAATGTCA 737705 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || | || || || || || || |||||||| | || |||||||||||||| Sbjct 737706 AAGCCCACTGCGCCTCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGTTT 737765 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 | | || ||||||||||| || |||||||| || || || ||| |||| || |||||| Sbjct 737766 CCTAGAAGACCTTTCAAGGAGAAGGGAGCCCCGAGTTCAATCATGGTCTCGCCAAAGATG 737825 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTC 9132 || || || || |||||||| | || |||| | | ||| | ||| | ||| || | || Sbjct 737826 GCTCCAGGGCGTGGTTTTTCAATGA-GAAGAGCCGGGTATAATTCCATAGCATCAATATC 737884 Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||| |||| | || |||| || || || |||||| Sbjct 737885 TCCATAGAGCTCTTCAAGTTCTCCAGCCATTTCTTTTTCACCT 737927 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || ||||||| |||| ||| ||||||| ||||||||| ||| |||| || |||||| Sbjct 759886 GTCTGAAACAGTCGCTCATCATCCCATTCTGGGTGTTCGCCTTTAAGAATGTCACAGACC 759945 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | || ||||| | ||||| | ||||| |||||||| | || || || || ||||| Sbjct 759946 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 760005 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | || || | ||| ||||| || || || | ||| | ||| | ||| | Sbjct 760006 ACCTCCTGTCCTACAGAAAATTTCAGATGGTCAGGGACGTGGGGTGGATAGATCATTTCT 760065 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 |||| || ||||| || || || ||||||||||| || |||| | ||| Sbjct 760066 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCCCCAGCAATCATCTG 760115 Score = 116 bits (128), Expect = 5e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 9490 AGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCTATGCGAA 9547 || ||||||||||| || | ||| || | ||| ||| ||| | | | ||| ||| Sbjct 749157 AGAATGGAATTGTTATACATGAACTGCTGGTACGTATAGTCTTGGTTTTGG--ATGTGAA 749214 Query 9548 AATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGT 9607 | |||||||| || | ||||||| ||||||||||||||||||| || ||||||| || Sbjct 749215 ATGTATCAGGCAGAAGTGGATGCCAGTGGTAGAGGGTATTGAACTCTGCTGCTATTCTGT 749274 Query 9608 TCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGT 9667 |||| || ||||| | ||| || | ||| || ||||| | |||| ||| |||| Sbjct 749275 TCTGATATTGAAACCTCTGATTGAAGAGAAGCTCTGGATCAAACTTCAGCTTGAAATGGT 749334 Query 9668 ACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||||| | || || ||||| | | || | ||| || |||||||| || Sbjct 749335 ACCCGCTTAAATGTTGCACATAATCTTCAATCACAATCTTGATGGTTTCTCC 749386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723656260462000