Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26]
7,930 sequences; 1,424,897,867 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq2696 118 2e-21
seq1305 107 5e-18
seq3172 84.2 5e-11
>seq2696
Length=106704
Score = 118 bits (130), Expect = 2e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || |||||||| |||| ||||||||||| | ||| | || ||
Sbjct 61797 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTC 61738
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || ||||| | | ||| ||||| ||| ||| |||||| ||
Sbjct 61737 TTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATC 61678
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| || || ||| || ||| | |||||| | | || || || | ||||| ||
Sbjct 61677 CTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGT 61618
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || |||||||| || ||
Sbjct 61617 TTTCCCGGTCAAGGTCTTCACAAAGATCTG 61588
Score = 118 bits (130), Expect = 2e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || |||||||| |||| ||||||||||| | ||| | || ||
Sbjct 62717 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTC 62658
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || ||||| | | ||| ||||| ||| ||| |||||| ||
Sbjct 62657 TTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATC 62598
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| || || ||| || ||| | |||||| | | || || || | ||||| ||
Sbjct 62597 CTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGT 62538
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || |||||||| || ||
Sbjct 62537 TTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508
Score = 114 bits (126), Expect = 3e-20
Identities = 157/219 (72%), Gaps = 3/219 (1%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || |||||||| |||| ||||||||||| | ||| | || ||
Sbjct 61569 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTC 61510
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || ||||| | | ||| ||||| ||| ||| |||||| ||
Sbjct 61509 TTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATC 61450
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| || || ||| || || | |||||| | | || || || | ||||| ||
Sbjct 61449 CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGT 61390
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || || | || |||||||| || || ||||||
Sbjct 61389 TTTCCCGGTCAAGGTCTTCACAAAGATCTG---CATTTT 61354
>seq1305
Length=349135
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| |||||||| ||||| || |||| ||||||||||| | ||| | ||||||
Sbjct 265691 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 265632
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| | ||||||||| || ||||| || | ||| ||||| ||| ||| |||||| |||
Sbjct 265631 TCTAACTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCC 265572
Query 199538 TGAATCTTTTGCTTCAC 199554
|| || || ||||||
Sbjct 265571 TGGATTTTGGCCTTCAC 265555
Score = 93.3 bits (102), Expect = 1e-13
Identities = 132/185 (71%), Gaps = 3/185 (2%)
Strand=Plus/Minus
Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510
|||||||| | | || | ||||||||||||||||| ||||| ||||| || | |||
Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767
Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570
||||| ||| ||| ||||| ||||| || || |||||| || | ||||||
Sbjct 275766 TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA 275707
Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTAC 199630
||| || || |||| ||||| ||||| || || | || |||||||| || || |
Sbjct 275706 CTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTG---C 275650
Query 199631 ATTTT 199635
|||||
Sbjct 275649 ATTTT 275645
>seq3172
Length=68839
Score = 84.2 bits (92), Expect = 5e-11
Identities = 74/91 (81%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498
||||| |||| |||||||| | | |||| ||||||||||||||||||||| || |||
Sbjct 29050 CCTTTCTGGATATTGTAGTCTGAGAGTGTCCGTCCATCTTCCAGCTGCTTTCCCGCAAAG 28991
Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
|| ||||||||||| || ||| ||| ||||
Sbjct 28990 ATCAGACGCTGCTGATCAGGAGGAATACCTT 28960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178801817881310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |