Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2696 123 2e-23 seq1305 84.2 2e-11 >seq2696 Length=106704 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || || |||||||||||| | || || ||| || Sbjct 61354 AAAATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 61413 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | ||||||| || ||||| || ||||| | ||| Sbjct 61414 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGAC 61473 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||| | | || | || ||||| |||||||| |||| ||||| ||| |||||| Sbjct 61474 CAACAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTAC 61533 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || || ||| | || |||||| |||| || ||| Sbjct 61534 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 61584 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || |||||||||||| | || || ||| ||| Sbjct 61585 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61644 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| || ||||| || ||||| | |||||| Sbjct 61645 GACACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61704 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || ||||| |||||||| |||| ||||| ||| ||||||||| Sbjct 61705 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAAC 61764 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | || |||||| |||| || || Sbjct 61765 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 61811 Score = 116 bits (128), Expect = 4e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || || || || || | || || |||||||||||| | || || ||| ||| ||| Sbjct 62508 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGTGAC 62567 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | | ||| | || | ||||||| || ||||| || ||||| | ||||||||| Sbjct 62568 ACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAACAG 62627 Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426 | | || | || ||||| |||||||| |||| ||||| ||| |||||||||||| Sbjct 62628 AGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAACATC 62687 Query 38427 CAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| | || || ||| | || |||||| |||| || || Sbjct 62688 CAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 62731 >seq1305 Length=349135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||||| |||||||| || ||||| | ||||||||| |||| || | || || || Sbjct 265564 AAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAACAGAGGCTGATCTTTGCTGGAAAG 265623 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||| | || || | ||||| ||| |||||||||||||| || || | || || ||| Sbjct 265624 CAGTTAGAAGATGGCCGCACTCTCTCTGACTACAACATCCAGAAAGAGTCCACTCTCCAT 265683 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || ||| |||| || ||| Sbjct 265684 CTTGTCCTCCGTCTGAGGGGAGGC 265707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500123220371200