Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2320 223 1e-52 seq107 96.9 1e-14 >seq2320 Length=150232 Score = 223 bits (246), Expect = 1e-52 Identities = 1030/1607 (64%), Gaps = 57/1607 (4%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || ||||| | || ||||||| || || || || |||| ||| | || || Sbjct 93211 GCCATAGGCATTGACTTGGGCACCACCTACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 93152 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || ||||| || || |||||||| || || || || | || |||||| Sbjct 93151 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACCACACCGAGCTATGTTGCCTTTACG 93092 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| | || | || | || || || |||| ||| | ||| |||| | Sbjct 93091 GACACGGAACGCCTCATCGGAGATGCAGCCAAGAATCA--GGTGGCTATGAATCCCAACA 93034 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| | | |||||| || ||| | |||||||| | | |||||| || || || Sbjct 93033 ACACCATTTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACCCAACGGTGCAGT 92974 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || || ||| ||| || | | || || |||||| | | |||| Sbjct 92973 CGGATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGGTGGGAAGCCCAAGGTGCAAG 92914 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | | || ||||| | ||| | || ||||||||||||||| |||||||| | | Sbjct 92913 TCGAGCACAAGGGTGAGAGTAAGTCCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 92854 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATT 451330 | |||||||| |||| ||| || || | |||| ||| | || ||| || ||| Sbjct 92853 CCAAAATGAAGGAAATAGCTGAGGCTTACCTGGGTTGCAAAGTC-CAGAGTGCTGTGATT 92795 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || || |||||||| | ||||| ||||| |||||||||||||| ||| Sbjct 92794 ACTGTACCTGCCTACTTCAATGACTCCCAACGCCAAGCCACTAAAGATGCAGGTACCATT 92735 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 | ||| | || || | || || |||||||| || || || ||||| | || ||||| Sbjct 92734 ACAGGTCTCAACGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGG- 92676 Query 451451 CTAGGAAAATCAAAAGA----AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 | ||| || || || | ||| || || ||| || | | ||||| || ||||| Sbjct 92675 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAATGTTCTGATCTTTGACTTGGGTGG 92616 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || || |||| ||| | | | || |||||||| | |||||||| || | || Sbjct 92615 TGGCACATTTGATGTTTCCATTTTGACCATCGAAGATGGCATCTTTGAAGTGAAATCTAC 92556 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG-GAATGGTTGA 451625 ||| ||||| || | || || || || |||| ||| || ||| | ||| Sbjct 92555 TGCTGGAGATACCCACTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGTCACTTTGT 92496 Query 451626 AAACTGATGTTCAA-CGAAAAC-TAAAAGTAGATATTTCTACTAACCAAAAAGCACTTAG 451683 | | ||||| || || | ||| || || ||| || ||| | |||| || | Sbjct 92495 GGA--GGAATTCAAGCGCAAGCATAAGCGT-GACATTGCTGGCAACAAGCGAGCAGTTCG 92439 Query 451684 ACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAG---TTCAACACAAACTAC 451740 ||| || ||| | || | ||| || ||| || || || || || || | Sbjct 92438 ACGGCTCCGCACAGCCTGTGAGAGAGCCAAGCGTACCCTGAGCTCCTCCACTCAGGCTTC 92379 Query 451741 TAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTGC 451800 ||| | ||||| ||| ||||||| || |||| ||| | |||||||||| Sbjct 92378 ---TATTGAGATTGACTCATTATTTGATGGCATTGATTTCTATACATCCATTACCCGTGC 92322 Query 451801 TAAATTTGA----ATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAACCTGTTGA 451854 | ||||| |||| || | || | | | |||| | ||||||| || Sbjct 92321 TCGCTTTGAGGAGCTCAA--TGCT----GATCTCTTCCGTGGTACTCTTGAACCTGTGGA 92268 Query 451855 TCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGG 451914 | | | | |||| |||| | |||| ||||| |||||||||| || || || Sbjct 92267 GAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAAATTAATGAAATTGTTCTGGTTGG 92208 Query 451915 AGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGGAA 451970 || || || || ||||| || || ||| | || | | |||| ||| |||| Sbjct 92207 TGGCTCAACTCGTATTCCCAAGATCCAAAAGTTGCTCCAAGACTTC----TTTAATGGAA 92152 Query 451971 AACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAG 452030 || | ||| || ||| ||||||||||||||||||| |||||||| ||||| || || | Sbjct 92151 AAGAGCTAAACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGCGCTGCTGTGCAGG 92092 Query 452031 CAGCTATTCTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTA 452089 | |||||||| | ||| || || | ||||| || ||| | ||| | | |||||| Sbjct 92091 CTGCTATTCTGATGGGTGACAAATCA-GAAAATGTACAAGACCTGCTGCTGCTTGATGTA 92033 Query 452090 ACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGA 452149 |||| || ||||| || |||| || |||||||| |||||||| ||||| ||||| Sbjct 92032 GCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAACGC 91973 Query 452150 GGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCA 452209 || ||||||| || | | || || || | || | | | | | |||||| Sbjct 91972 AACACAACTATTCCCACCAAGCAAACCCAGACCTTCA--CCACCTATTCAGA--CAACCA 91917 Query 452210 G----GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAA 452265 | |||| | ||||| | ||| || || | || ||||| || || ||| Sbjct 91916 GAGTAGTGTGCTGGTGCAAGTATATGAGGGTGAGAGAGCCATGACCAAGGACAACAATCT 91857 Query 452266 ACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGA 452325 || || | ||| || || ||||| ||| || | || || || ||||| Sbjct 91856 GCTGGGCAAGTTTGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAGATTGA 91797 Query 452326 AATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCAT 452384 | || | ||| | |||||||||||||| || ||||| | |||||| || || | || Sbjct 91796 GGTGACATTTGACATAGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCA- 91738 Query 452385 CTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGAT 452443 | |||||| |||| || || ||||| |||||||| ||| ||| | ||||| || Sbjct 91737 CAGGAAAA-GAGAACAAGATCACAATAACTAATGACAAAGGCCGCCTCAGCAAAGATGAC 91679 Query 452444 ATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||||| ||||| | |||||||| | ||||| || ||||| Sbjct 91678 ATTGACCGCATGGTGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGA 91632 >seq107 Length=1493841 Score = 96.9 bits (106), Expect = 1e-14 Identities = 115/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || ||||| |||||||| | || || ||||| || Sbjct 1127747 GTTACAAATGCCGTGGTCACAGTCCCGGCTTACTTCAATGACTCCCAGCGCCAAGCTACA 1127688 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | || || || |||||||||||||| || || ||| Sbjct 1127687 AAAGATGCCGGAACCATTGCTGGTCTCAACGTGCTCCGAATTATTAATGAGCCAACCGCA 1127628 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAG 451466 ||||| | || || || || ||| || ||||| Sbjct 1127627 GCTGCGATTGCTTACGG-CTTGGACAA--AAAAG 1127597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975517660836440