Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2320 372 2e-97 seq73 91.5 1e-12 seq107 89.7 4e-12 >seq2320 Length=150232 Score = 372 bits (412), Expect = 2e-97 Identities = 943/1416 (67%), Gaps = 26/1416 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||||| ||||| || |||||||| ||||| | |||||||| || ||||| || || || Sbjct 91752 GCAGTAACATTGAGGATACCATTTGCATCTATGTCAAATGTCACCTCAATCTGGGGCACA 91811 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | |||||||| || ||| || | ||| | ||||| ||| || || || Sbjct 91812 CCACGAGGTGCAGGTGGAATACCTGTCAGGTCAAACTTGCCCAGCAGATTGTTGTCCTTG 91871 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436 || | || |||||||| | | ||| | || | ||||| | || || ||||||| Sbjct 91872 GTCATGGCTCTCTCACCCTCATATACTTGCACCAGCACACTAC--TCTGGTTGTCTGAAT 91929 Query 517437 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || ||||| ||| || ||||| |||||||| | | || | Sbjct 91930 AGGTGGTGAAGG-TCTGGGTTTGCTTGGTGGGAATAGTTGTGTTGCGTTTGATTAAGGCA 91988 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||||| || || || | ||| |||||||| || | ||||||| || | Sbjct 91989 GTCATCACACCACCAGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGC 92048 Query 517556 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | ||| | ||||| | | || | ||| | |||||||| || || | |||||| || Sbjct 92049 AGGTCTTGTACATTTTC-TGATTTGTCACCCATCAGAATAGCAGCCTGCACAGCAGCGCC 92107 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT- 517673 |||||| ||||||||||||||||| | ||| ||||| | ||| ||||| || || | Sbjct 92108 ATATGCCACAGCTTCATCAGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTC 92167 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 ||| | || || | | ||| |||||||||| ||| || ||||| | |||||||||| Sbjct 92168 TTGGAGCAACTT-TTGGATCTTGGGAATACGAGTTGAGCCACCAACCAGAACAATTTCAT 92226 Query 517734 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 | ||| ||| || || || | ||| | | | || || || ||||||||| Sbjct 92227 TAATTTGTCCTTTGTCTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTAC 92286 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 517853 | | || | || | | || || || || ||| | |||| | || ||| Sbjct 92287 CACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGAGCACGGGTAATGGATGTATAGAAAT 92346 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 |||| || || || || || |||| ||||| | || ||||| || || || | || Sbjct 92347 CAATGCCATCAAATAATGAGTCAATCTCAATAGAAGCCTGAGTGGAGGAGCTCAGGGTAC 92406 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 517971 | || || | ||||| ||||| | || | ||| | || | ||| ||| | | Sbjct 92407 GCTTGGCTCTCTCACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAAT 92464 Query 517972 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 518031 || |||| || | |||||| || || ||| | | || | ||||| ||||| Sbjct 92465 GTCACGCTTATGCTTGCGCTTGAATTCCTCCACAAAGTGACTCACCATGCGATTGTCAAA 92524 Query 518032 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 518091 || || || ||||| | |||| ||| | |||| | | |||| || | |||||||| Sbjct 92525 GTCCTCCCCACCCAAGTGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTC 92584 Query 518092 AAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 518151 | | ||||| | |||||| || |||||||||| ||||| || || |||||| | Sbjct 92585 GATGGTCAAAATGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGAACATTCTT 92644 Query 518152 ------TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 | || || |||||||| | |||||| |||| |||||||| || || || Sbjct 92645 CTCACCTGCTCTGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCAGCCGTGGGCTC 92704 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 |||||| || | ||| || || ||||| | ||| | |||||||||||||||||||| | Sbjct 92705 ATTAATGATGCGCAATACGTTGAGACCTGTAATGGTACCTGCATCTTTAGTGGCTTGGCG 92764 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTACCAA 518324 ||| || || || || || ||||| |||||||| || ||| || | |||| ||| | Sbjct 92765 TTGGGAGTCATTGAAGTAGGCAGGTACAGTAATCACAGCACTCTG-GACTTTGCAACCCA 92823 Query 518325 TATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 ||||| || ||| |||||||| | || | ||| || ||||||| ||| || Sbjct 92824 GGTAAGCCTCAGCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAA 92883 Query 518385 AATATTGCTTGGATTCATTTTGATATGAT--ACTTCAAAATATGGTTTATTACCAACATT 518442 | | ||| ||| | | || | |||| | | || || ||| || | Sbjct 92884 AGAAGGACTTACTCTCACCCT--TGTGCTCGACTTGCACCTTGGGCTTCCCACCTTCACT 92941 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 | || || ||||||| |||||||| || || || || |||||| ||| | | Sbjct 92942 CACCACACGGAAAGGCCAGTGCTTCATATCCGACTGCACCGTTGGGTCATCAAATTTGCG 93001 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 ||||| | || || ||||||||||| || ||| | ||||| || || | |||| || Sbjct 93002 GCCAATGAGACGCTTGGCATCAAAAATGGTGTTGTTGGGATTCATAGCCACCTGATTCTT 93061 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 |||||||||||| || || |||| || || ||||| | |||||| || || ||||| Sbjct 93062 GGCTGCATCTCCGATGAGGCGTTCCGTGTCCGTAAAGGCAACATAGCTCGGTGTGGTGCG 93121 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACC 518658 || ||||| || || || ||||| || ||||| || Sbjct 93122 GTTGCCTTGGTCGTTGGCGATAATCTCCACTTTCCC 93157 >seq73 Length=1862180 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || || || || ||||||||||| |||||||||||||| ||| | ||| | ||||| ||| Sbjct 678044 AACTGCACTCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 678103 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 ||| | || || || | |||||||| || ||||| |||||||| || | ||||| Sbjct 678104 GGAGTTGTGGGTAGGGACAAATATGGAGTATTTCCACTGCGAGGAAAAATTCTTAATGTA 678163 Query 635558 AGGGATGC 635565 |||| || Sbjct 678164 CGGGAAGC 678171 >seq107 Length=1493841 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | || || |||| ||||| || ||||| ||||||||||||| | || Sbjct 1127599 TTTTTGTCCAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACG 1127658 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || ||||| | || || || || || || Sbjct 1127659 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCTTGGCGCTGGGAGTCATTGAAGTAA 1127718 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | ||||||| Sbjct 1127719 GCCGGGACTGTGACCACGGCAT 1127740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780428887278580