Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2320 403 2e-107 seq107 147 3e-30 seq716 141 1e-28 seq281 132 6e-26 >seq2320 Length=150232 Score = 403 bits (446), Expect = 2e-107 Identities = 1036/1570 (66%), Gaps = 22/1570 (1%) Strand=Plus/Plus Query 6590 TCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTA 6649 || || ||||| ||||| |||||||| ||||| | | || || ||||| || Sbjct 91653 TCTGCTTCTTGCACCATGCGGTCAATGTCATCTTTGCTGAGGCGGCCTTTGTCATTAGTT 91712 Query 6650 ATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCA 6709 || || ||||| | ||| || | | ||| || | ||| | ||||| | |||||| Sbjct 91713 ATTGTGATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAGGATACCA 91772 Query 6710 TTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATA 6769 |||||||| | || || | || | ||| || || ||| | ||||| | ||||||| Sbjct 91773 TTTGCATCTATGTCAAATGTCACCTCAATCTGGGGCACACCACGAGGTGCAGGTGGAATA 91832 Query 6770 CCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCA 6829 || || | ||||| | || || | | |||| ||| | | | | | ||||| ||| Sbjct 91833 CCTGTCAGGTCAAACTTGCCCAGCAGATTGTTGTCCTTGGTCATGGCTCTCTCACCCTCA 91892 Query 6830 TAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTC 6889 || |||| | ||| | || || ||| || | |||| | || || | Sbjct 91893 TATACTTGCACCAGCACACTACTCTGGTTGTCTGAATAGGTGGTGAAGGTCTGGGTTTGC 91952 Query 6890 TTAGATGGAATCGTCGTATTTC-TCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 || | ||||| || || || | | || ||| | ||||| | |||||| ||| || Sbjct 91953 TTGGTGGGAATAGTTGTGTTGCGTTTGATTAAG-GCAGTCATCACACCACCAGCAGTCTC 92011 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 | || ||||| || |||| || || | || | ||||||||| ||| ||| Sbjct 92012 AATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGCAGGTCTTGTACATTTTCTGATTT 92071 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 |||||| | | || || || || || | || || ||||| || || ||||| || || Sbjct 92072 GTCACCCATCAGAATAGCAGCCTGCACAGCAGCGCCATATGCCACAGCTTCATCAGGATT 92131 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || |||| || || ||||| || ||||| | || | || | ||| || || || Sbjct 92132 TATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTTTTGGATCTTGGG 92191 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 || || || || ||||| |||| ||| |||||||| | || ||| || | ||| | Sbjct 92192 AATACGAGTTGAGCCACCAACCAGAACAATTTCATTAATTTGTCCTTTGTCTAGCTTAGC 92251 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || ||||| | || || |||||||| | | |||||| | || | || || Sbjct 92252 ATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAGCATTGAGCTC 92311 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 |||||| || |||||||||||||||||||||||||||| ||| || |||| || ||||| Sbjct 92312 CTCAAAGCGAGCACGGGTAATGGATGTATAGAAATCAATGCCATCAAATAATGAGTCAAT 92371 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 ||||| | | || | | || | || ||||| || | |||||| || || || Sbjct 92372 CTCAATAGAAGCCTGAGTGGAGGAGCTCAGGGTACGCTTGGCTCTCTCACAGGCTGTGCG 92431 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | || |||| || ||| ||| || | ||| || |||||| || || || || || Sbjct 92432 GAGCCGTCGAACTGCTCGCTTGTTGCCAGCAATGTCACGCTTATGCTTGCGCTTGAATTC 92491 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 || ||||| | | | | || || || || ||||||||||| ||||| || Sbjct 92492 CTCCACAAAGTGACTCACCATGCGATTGTCAAAGTCCTCCCCACCCAAGTGGGTATCTCC 92551 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 || || | ||| ||||||||||| || |||| ||| | || | ||||||||||| || Sbjct 92552 AGCAGTAGATTTCACTTCAAAGATGCCATCTTCGATGGTCAAAATGGAAACATCAAATGT 92611 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC------TTATC 7602 |||||||||| |||||| || || || ||| | || | || || || ||||| Sbjct 92612 GCCACCACCCAAGTCAAAGATCAGAACATTCTTCTCACCTGCTCTGCTCCCTTTTTTATC 92671 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGC 7661 | ||| || || || || || ||||| || |||||||| || || || || ||| || | Sbjct 92672 CAAACCATAGGCAATGGCAGCAGCCGTGGGCTCATTAATGATGCGCAATAC-GTTGAGAC 92730 Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721 | | ||| || | |||||||| || ||||| ||||| || || || |||||||| || | Sbjct 92731 CTGTAATGGTACCTGCATCTTTAGTGGCTTGGCGTTGGGAGTCATTGAAGTAGGCAGGTA 92790 Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTT 7781 | || | || || | |||||| ||| || || | || || || || ||||||| Sbjct 92791 CAGTAATCACAGCACTCTGGACTTTGCAACCCAGGTAAGCCTCAGCTATTTCCTTCATTT 92850 Query 7782 TGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAAT 7841 |||| | ||||| || ||||| ||||||| || || | ||||| || | Sbjct 92851 TGGTCAATACCATAGAGGAAATTTCTTCAGGAAAGAAGGACTTACTCTCACCCTTGTGCT 92910 Query 7842 CAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA---TACGACCAATCTT 7898 | |||| | | |||| | ||| |||| | ||| | | | ||| | | Sbjct 92911 CGACTTGCACCTTGGGCT--TCC----CACCTTCACTCACCACACGGAAAGGCCAGTGCT 92964 Query 7899 TCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAA 7958 ||||||| || ||| | |||| ||| || | || || |||||||| ||||||| Sbjct 92965 TCATATCCGACTGCACCGTTGGGTCATCAAATTTGCGGCCAATGAGACGCTTGGCATCAA 93024 Query 7959 AAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTT 8018 ||| ||||| ||||| ||||| || || ||||| || || || ||||| || |||| Sbjct 93025 AAATGGTGTTGTTGGGATTCATAGCCACCTGATTCTTGGCTGCATCTCCGATGAGGCGTT 93084 Query 8019 CATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAA 8078 | | |||||||| || || || || || || || || ||||||||||| || | Sbjct 93085 C---CGTGTCCGTAAAGGCAACATAGCTCGGTGTGGTGCGGTTGCCTTGGTCGTTGGCGA 93141 Query 8079 TAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAA 8138 |||| || || ||| || | || |||||||| || || || || || || |||| Sbjct 93142 TAATCTCCACTTTCCCGTGCTGGAAAACTCCGACGCAGGAGTAGGTGGTGCCCAAGTCAA 93201 Query 8139 TACCGATTGC 8148 | || || || Sbjct 93202 TGCCTATGGC 93211 >seq107 Length=1493841 Score = 147 bits (162), Expect = 3e-30 Identities = 360/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||||||||| || | || || |||||||| ||||| || Sbjct 1126740 GCACCGTAGGCTACGGCTTCATCGGGGTTGATGCTCTTGTTGAGTTCTTTGCCGTTGAAG 1126799 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | || || || || || || || || || || || |||| ||||| Sbjct 1126800 AAATCCTGAAGGAGTTTCTGGATCTTGGGAATCCGGGTGGAGCCGCCAACCAGCACGATG 1126859 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | ||| | |||||||| | ||| | ||| || || | || || || || |||| Sbjct 1126860 TCGTGCACCTGAGATTTATCCAGCTTGGCGTCCCGCAGCGCCTTCTCCACGGGGTCCAGC 1126919 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| ||| || || || || || ||||| ||||| || ||| Sbjct 1126920 GTGCCGCGGAACAGGTCGGCGTTCAGCTCTTCGAAGCGCGCTCGGGTGATGGAGGTGTAG 1126979 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | ||| ||||| | || || || || ||| | | || | | || || | Sbjct 1126980 AAATCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGAGTGCTGGAGGACAGG 1127039 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||| || || || || | ||| || | ||| ||| ||| || Sbjct 1127040 GTGCGCTTGGCCCGCTCGCAGGCGGTGCGCAGACGGCGGACGGCCCGCTTGTTTTCGCTG 1127099 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCGA--AGGAGTCTCGAA 7456 || || ||||| || || || || ||||| | | || || || | | | | Sbjct 1127100 ATGTCCTTCTTGTGCTTCCGCTTGAACTCGGTGATGAAATGGTTGACCATGCGGTT---G 1127156 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| || |||| ||| || || || || |||| || ||||||||||| || Sbjct 1127157 TCGAAGTCTTCGCCCCCCAGGTGGGTGTCTCCTGCCGTCGACTTCACTTCAAAGATGCCG 1127216 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | | || || ||||| || || || ||||| || || || || || Sbjct 1127217 TCCTCGATCGTCAGGATGGAGACGTCAAAAGTGCCCCCGCCCAGATCGAAGATCAGCACA 1127276 Query 7577 TTC 7579 ||| Sbjct 1127277 TTC 1127279 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA 7666 ||||| || || || || || ||||| ||||||||||| || || ||| || |||||| Sbjct 1127611 CCGTAAGCAATCGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACGTTGAGACCAGCA 1127670 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || ||| | |||||||| || ||||| || || || || || ||||| |||||||| || Sbjct 1127671 ATGGTTCCGGCATCTTTTGTAGCTTGGCGCTGGGAGTCATTGAAGTAAGCCGGGACTGTG 1127730 Query 7727 ACGACCGC 7734 || || || Sbjct 1127731 ACCACGGC 1127738 >seq716 Length=591022 Score = 141 bits (156), Expect = 1e-28 Identities = 233/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| |||||||| || || ||||| ||||| || ||||| |||| ||| ||||| | || Sbjct 73132 CAGCTCCTCAAAGCGAGCCCGGGTGATGGAAGTGTAGAAGTCAATGCCCTCGTAGAGGGA 73073 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||||||||||||| | || | | || | ||| ||||| || ||||| || || Sbjct 73072 GTCAATTTCAATGGAAGCCTGGGTGGAGGAGCTGAGCGTGCGCTTGGCCCGCTCGCAAGC 73013 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 || || | || || | ||| ||| || | | || || ||||| || || || || Sbjct 73012 TGTGCGCAGCCGCCGGACGGCCCGCTTATTGTCCGTGATGTCCTTCTTGTGCTTGCGCTT 72953 Query 7423 AAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 ||||| |||||| | | | || ||||| ||||| |||| ||| || Sbjct 72952 GAACTCCGACACGAAGTGGTTCACCATGCGATTGTCAAAATCCTCACCGCCCAGGTGAGT 72893 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 || || || |||| ||| ||||||||||| || | ||||| | | | || ||||| Sbjct 72892 GTCTCCAGCCGTCGATTTCACTTCAAAGATGCCATCCTCAATCGTCAGAATGGACACATC 72833 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||| || ||||| ||||||||||||||||| ||||| Sbjct 72832 AAAGGTGCCACCGCCCAGGTCAAAAATGAGGACGTT 72797 >seq281 Length=1016560 Score = 132 bits (146), Expect = 6e-26 Identities = 459/706 (65%), Gaps = 29/706 (4%) Strand=Plus/Minus Query 7469 CCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTT 7528 ||||||| |||||| || ||| |||| || |||||||||||||| || | || | | Sbjct 820816 CCACCCAGGTGTGTGTCTCCCACGGTGGCCTTGACTTCAAAGATGCCGTCCTCCACGGAA 820757 Query 7529 AACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCG 7588 | | ||||| ||||| || || |||||||||||||||||||| | ||| || | Sbjct 820756 AGTATAGAAACGTCAAAGGTGCCTCCACCCAGGTCAAAAATGAGGATGTTTCGGCCGCCT 820697 Query 7589 ---TCTTTGTTCTTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 |||| || | | || || ||||| ||||| || |||||||| || || || | Sbjct 820696 GCCTCTTGGTGCCTGGCGTCCAGGCCGTAGGCGATGGCAGCCGCCGTGGGCTCGTTCAGG 820637 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 | || | ||||| ||||| | | ||||| | || || || || || | | Sbjct 820636 AGCTTCAGGATCTGGAGGCCTGCAATGACTCCGGCATCAATGGTGGCCTGCCGCTGGGCA 820577 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||| | |||||||| || ||||| || | || | | || | || || || | Sbjct 820576 TCGCTGAAGTAGGCGGGCACCGTAACAATGGCTTGGGAAACGGAGTAGCCCAGGTAGGCC 820517 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | | ||||| |||| | ||||| | || ||||| |||| || | Sbjct 820516 TCAGCCGTTTGCTTCATCTTGGCCAAGACCATGGCGGAGATCTCCTCAGGGTAGAA--GG 820459 Query 7823 TTCGTT--TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAA 7880 | |||| | || || |||| | | | || ||| | | || | | Sbjct 820458 TCCGTTGTTTGCCTTTGTGGGAGACTTGGACTTTTAGCTTCTCCTC------GTGGCTCA 820405 Query 7881 CCT---TATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG--TCCGAAAACTTTCT 7935 || || ||| ||| | |||||| || || ||||| | || ||| | |||| | Sbjct 820404 CCACAGTAAACGGCCAGTGTTTCATGTCCTCCTGGAC--GGCGGCATCCTCATACTTGCG 820347 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || || ||||| || ||||| || ||||| | |||||| | | | ||| |||| Sbjct 820346 GCCAATCAGCCGCTTGGCGTCAAACACCGTGTTCTGGGGGTTGAGAGGGGCCTGGCTCTT 820287 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCG 8054 |||| |||||| || || |||| | || || || || ||||| | |||| || | Sbjct 820286 GGCCGGGTCCCCAATCAGGTGTTCTGTGTTG---GTGAAGGCCACGTA-GCTGGGCGTAG 820231 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | || |||||||||||||| || || || ||||| ||| | || |||||| | |||| Sbjct 820230 TCCGCTTCCCTTGGTCGTTGGCGATGATCTCTACTTTGTCATGCTGGCAGACGGCCACGC 820171 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTTT 8160 | || | || ||||| | ||||| ||||| || | |||||||| Sbjct 820170 AGGAGAAGGTGGTTCCGAGGTCAATCCCGATAGCCAG-GTCATTTT 820126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635069842461200