Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2696 143 6e-29 seq1305 134 3e-26 >seq2696 Length=106704 Score = 143 bits (158), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | ||||| | || ||||| Sbjct 61565 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCC 61506 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | || |||||||| ||||||||||||||||| || || Sbjct 61505 AGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGG 61446 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| |||||||||||||| ||| ||||| || ||||| | || Sbjct 61445 ATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATGGTT 61389 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || || || | ||||||| Sbjct 61388 TTCCCGGTCAAGGTCTTCACAAAGATCTGCATTT 61355 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | ||||| | || ||||| Sbjct 61793 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCC 61734 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | || |||||||| ||||||||||||||||| || || Sbjct 61733 AGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGG 61674 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| || ||||||||||| ||| ||||| || ||||| | || Sbjct 61673 ATTTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATGGTT 61617 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || || || | ||||| Sbjct 61616 TTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 132 bits (146), Expect = 1e-25 Identities = 152/203 (75%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | ||||| | || ||||| Sbjct 62713 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCC 62654 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | || |||||||| ||||||||||||||||| || || Sbjct 62653 AGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGG 62594 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| || ||||||||||| ||| ||||| || ||||| | || Sbjct 62593 ATTTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATGGTT 62537 Query 195109 TTTCCTGTCAAAGTTTTTACGAA 195131 || || ||||| || || || || Sbjct 62536 TTCCCGGTCAAGGTCTTCACAAA 62514 >seq1305 Length=349135 Score = 134 bits (148), Expect = 3e-26 Identities = 141/184 (77%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 194962 TTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGT 195021 ||||| |||| || || | |||||||| |||||||| || || ||||| || | ||| Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767 Query 195022 TGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 |||||||||||||||||||| ||||| || ||||| ||| || |||||||||||||| Sbjct 275766 TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTC- 275708 Query 195082 GAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 |||| ||||| || ||||| | ||||| || ||||| || || || || | ||| Sbjct 275707 --ACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGC 275650 Query 195139 ATTT 195142 |||| Sbjct 275649 ATTT 275646 Score = 122 bits (134), Expect = 2e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || |||||||||||||| || || ||||| || | ||||| | |||||||| Sbjct 265688 ACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCT 265629 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || | ||||||||||||||||||||||||||||| || Sbjct 265628 AACTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCCTGG 265569 Query 195052 ATTTT 195056 ||||| Sbjct 265568 ATTTT 265564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109368873202310