Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2320 181 9e-40 seq716 100 2e-15 seq2717 89.7 4e-12 seq2696 87.8 1e-11 >seq2320 Length=150232 Score = 181 bits (200), Expect = 9e-40 Identities = 370/547 (68%), Gaps = 2/547 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || ||||| || || || || ||||| || || || || |||| || | || ||| Sbjct 93211 GCCATAGGCATTGACTTGGGCACCACCTACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 93152 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || ||||| ||||| || ||||| ||| | || || || |||||| | || ||| Sbjct 93151 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACCACACCGAGCTATGTTGCCTTTACG 93092 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | || |||||||| || |||| | || ||||| | ||| Sbjct 93091 GACACGGAACGCCTCATCGGAGATGCAGCCAAGAATCAGGTGGCTATGAATCCCAACAAC 93032 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || ||||||||||| || ||| | ||||| | | ||| |||| | || || ||| | Sbjct 93031 ACCATTTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACCCAACGGTGCAGTCG 92972 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| |||||||||| | || | || ||| || || | | ||| Sbjct 92971 GATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGGTGGGAAGCCCAAGGTGCAAGTC 92912 Query 550292 ACTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 || |||| | | ||| || | || ||| ||||||| |||||||| || | Sbjct 92911 GAGCA-CAAGGGTGAGAGTAAGTCCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGAC 92853 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 |||||||| ||| ||| |||| | ||| |||| | ||| || || || Sbjct 92852 CAAAATGAAGGAAATAGCTGAGGCTTACCTGGGTTGCAAAGTCCAGAGTGCTGTGATTAC 92793 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 |||||| || || || |||||||| ||||| ||||| ||||||||||| || ||| | Sbjct 92792 TGTACCTGCCTACTTCAATGACTCCCAACGCCAAGCCACTAAAGATGCAGGTACCATTAC 92733 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || || || | || || || ||||| || || |||||||| |||| ||||| | Sbjct 92732 AGGTCTCAACGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGGTTT 92673 Query 550531 TGATAAA 550537 |||||| Sbjct 92672 GGATAAA 92666 Score = 143 bits (158), Expect = 2e-28 Identities = 457/699 (65%), Gaps = 16/699 (2%) Strand=Plus/Minus Query 551899 TTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAA 551958 |||| || || | || || || || |||||||| || | || || ||||| Sbjct 92442 TTCGACGGCTCCGCACAGCCTGTGAGAGAGCCAAGCGTACCCTGAGCTCCTCCACTCAGG 92383 Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 | ||||||| | || ||||||||||| || ||||||| |||| | ||| | | | Sbjct 92382 CTTCTATTGAGATTGACTCATTATTTGATGGCATTGATTTCTATACATCCATTACCCGTG 92323 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAG 552078 | ||||| || | | |||||||||| | || ||||||| || || | | Sbjct 92322 CTCGCTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAGG 92263 Query 552079 TTTTAAGAGATTCAAAGATTGATAAA-TCCAAAGTACATGAAATTGTGCTTGTTGGTGGA 552137 | | | ||| | ||| | || ||| |||| || |||||||||| || |||||||| Sbjct 92262 CTCTTCGTGATGCTAAGCTAGACAAAGGACAAATTA-ATGAAATTGTTCTGGTTGGTGGC 92204 Query 552138 TCTACAAGAATTCCTAAAATTCGCGAAATGTT-----AAGTTCTTATTTCAATGGTAAAA 552192 || || | ||||| || || | ||| ||| ||| ||| ||| ||||| ||| Sbjct 92203 TCAACTCGTATTCCCAAGAT---CCAAAAGTTGCTCCAAG-ACTTCTTT-AATGGAAAAG 92149 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | |||| |||| | ||||| ||||| ||||| || ||||| || || | || || | Sbjct 92148 AGCTAAACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGCGCTGCTGTGCAGGCTG 92089 Query 552253 CTATTCT--TTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTAC 552310 ||||||| | |||||| | | ||||| ||||| | | | || | ||||| | Sbjct 92088 CTATTCTGATGGGTGACAAA-TCA-GAAAATGTACAAGACCTGCTGCTGCTTGATGTAGC 92031 Query 552311 TCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAA 552370 || || ||||| ||| | || || | ||| ||| | |||||| | ||| | | || Sbjct 92030 ACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAACGCAA 91971 Query 552371 TACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGC 552430 || |||||||| || || | | || | || |||||||| || || | | Sbjct 91970 CACAACTATTCCCACCAAGCAAACCCAGACCTTCACCACCTATTCAGACAACCAGAGTAG 91911 Query 552431 TGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGG 552490 ||| | ||| | | ||| || || ||| | || || || || |||| || || Sbjct 91910 TGTGCTGGTGCAAGTATATGAGGGTGAGAGAGCCATGACCAAGGACAACAATCTGCTGGG 91851 Query 552491 TACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTAC 552550 | ||| | | ||||||||| ||||| |||||||| || || || ||||| || || Sbjct 91850 CAAGTTTGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAGATTGAGGTGAC 91791 Query 552551 TTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 || || || ||||| ||||| || | ||||| ||||| Sbjct 91790 ATTTGACATAGATGCAAATGGTATCCTCAATGTTACTGC 91752 >seq716 Length=591022 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || || ||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 55644 ATGCGGTAATCACGGTCCCAGCCTATTTCAATGACTCTCAGCGGCAAGCCACCAAAGACG 55703 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || || | || || ||||||||||| || ||||| ||||| || || || || Sbjct 55704 CCGGCACCATCTCGGGCCTCAATGTTCTTCGCATCATCAACGAACCGACGGCAGCAGCCA 55763 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || |||||| Sbjct 55764 TTGCCTATGGGCTGGATAAA 55783 >seq2717 Length=103560 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 430285 AAtttttttttCACCTTTATCATAATTAGTGGATGTTAATAGTTCTCCAAAAATCATCGA 430344 || |||||||||| | | |||||||||| |||| |||||||| | ||||||||| | | Sbjct 77020 AACTTTTTTTTCATCATCATCATAATTACTGGACGTTAATAGCTGTCCAAAAATTAAGGC 76961 Query 430345 TGGTACCATGATTTTATGTTCTTTATGCTCGACGACATCAATACCATCACCATTATTCCA 430404 || || || || | | ||||||| || || ||| |||||| | ||||||||||| Sbjct 76960 AGGAACATACATCTTTTCTACTTTATGTTCCACAACAGGAATACCTTTTCCATTATTCCA 76901 Query 430405 AACACTAAT 430413 || ||| || Sbjct 76900 AATACTTAT 76892 >seq2696 Length=106704 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| ||||| ||| | ||| || ||||| |||| ||| Sbjct 61578 CCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGA 61521 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||| || || || || ||||| || | ||| || || ||||||||||| Sbjct 61520 GTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATG 61461 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| || ||||| || || |||||| || ||| || | | || || Sbjct 61460 CCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTG-GGCTCCACCTC 61402 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| || || | || || || || || ||||| Sbjct 61401 TAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61357 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| ||||| ||| | ||| || ||||| |||| ||| Sbjct 61806 CCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGA 61749 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||| || || || || ||||| || | ||| || || ||||||||||| Sbjct 61748 GTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATG 61689 Query 563371 CCTTCTTTATCTTGAATTTT 563390 ||||||||||| || ||||| Sbjct 61688 CCTTCTTTATCCTGGATTTT 61669 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| ||||| ||| | ||| || ||||| |||| ||| Sbjct 62726 CCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGA 62669 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||| || || || || ||||| || | ||| || || ||||||||||| Sbjct 62668 GTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATG 62609 Query 563371 CCTTCTTTATCTTGAATTTT 563390 ||||||||||| || ||||| Sbjct 62608 CCTTCTTTATCCTGGATTTT 62589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028876625835700