Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2281 105 8e-18 seq1132 91.5 2e-13 seq898 84.2 3e-11 >seq2281 Length=154634 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | ||| || || || || | ||||||||||| ||||| || | Sbjct 5518 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5577 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| |||||||||| ||||||||||| || ||||| || || ||||| | Sbjct 5578 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACG 5637 Query 37318 C 37318 | Sbjct 5638 C 5638 >seq1132 Length=407820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| ||||| |||||||||| || || || |||| || ||||||||||| ||||| Sbjct 174120 CATAACACCCATCCTTTGATATTCCCCTACACGCTTTTCAAAGAAATTTGTCTTGCCTTC 174061 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | || ||||| |||||||| ||||||||||| Sbjct 174060 CAAAGAGATATTCTCCATAAAGTCAAATGGATT 174028 >seq898 Length=501174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| | ||| | || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 436011 TTCTTTAGAATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTT 435952 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| || ||||| ||||| | ||||| Sbjct 435951 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTC 435913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592258086597200