Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 138 2e-27 seq79 127 4e-24 seq1179 118 2e-21 seq735 89.7 1e-12 >seq3 Length=2988119 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || ||| | ||| || || || || |||||||| | Sbjct 2071786 GCTGGCAGCCGTTGTTCACGTGGTTCATGACTTTCTGCTTCAGCTGCGCTACCTGGTCTC 2071845 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || || || || || ||||| ||||| || ||| || |||||| || | Sbjct 2071846 GGAGCGCGCTGGCCGTGTTAGAGAGTCCCGCGTTCTCGTTCTTTAGGCTCTTCACCTTGT 2071905 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||| || | | | |||||| ||||| |||| ||||| Sbjct 2071906 CCTCCAGCCGAGCGATGCGCTCCAGCTTCCTCTTCCTGCATTTTGTGGCGGCCAGGCGGT 2071965 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || | || | ||| |||||||||| |||||||| ||||||| || |||||| Sbjct 2071966 TGCGAAGCCGTTTCCTCTCCACCTTGATGCGCTCCTGGTCTTCCATGTTAATGGGAGAC 2072024 >seq79 Length=1654135 Score = 127 bits (140), Expect = 4e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 ||| |||| ||||||||||||||||| | |||||| || | |||| ||| |||| | Sbjct 1260465 CCTCTGCTGACGGGGCTGCCCTGGTAGGTCTCGTAGGGCCCGTACTCCCGGGCGAGCTGG 1260406 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| |||||||||||| || || |||| | ||||||| || | Sbjct 1260405 CAGCTGGCCTCCAGGGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGAGCAGCTGG 1260346 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| ||| | |||||| | | ||||| | ||| | || ||||| ||||| ||| Sbjct 1260345 GCCTCGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACC 1260286 Query 213321 CCGATGCCGATGGGTCTGTG 213340 || ||||| ||||| | ||| Sbjct 1260285 CCAATGCCAATGGGGCGGTG 1260266 Score = 125 bits (138), Expect = 1e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||| Sbjct 1258296 GTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 1258237 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||| | ||| ||||| |||| Sbjct 1258236 TTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCTGTCTCCGTCTGG 1258177 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCG 213691 ||| | | || | |||||| | | |||||| ||||| || Sbjct 1258176 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACTCG 1258133 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| |||||||||| ||| |||||| ||| ||||||| | |||| ||| ||| Sbjct 1256907 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAAAGGTCCCGAGCCCTCTGCTCCTCCTT 1256848 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || | ||| || ||| || || || ||||||||||| |||||| ||||||| ||| Sbjct 1256847 CCCCGTGTTCTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAGTGCCAGGGCTCCAAGTA 1256788 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 |||||| ||||| || || |||| Sbjct 1256787 GATGGCGAAGGCCCCGGGTCTCT 1256765 Score = 93.3 bits (102), Expect = 8e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||| |||| | ||| | ||| |||||||| || | | Sbjct 1261250 CTGGAACTCCCCCGAGAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGTTCCACGGA 1261191 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 |||||||||||||| |||||| || ||| ||||||||||| || ||||||||||| || Sbjct 1261190 CTCGTTGTTCCCCAAAATCTGAGCCGTGGAAGCTGTGGGCATCGGGGCCACCAGGAGGCT 1261131 Query 213038 GTTCCTCACTCCGT 213051 |||||| | |||| Sbjct 1261130 GTTCCTGATCCCGT 1261117 >seq1179 Length=384977 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || |||||||| ||||| || | | || || || ||| Sbjct 335576 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCCCGGAGGAGGTTGGCCGTCGAGGCCAGC 335635 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||| |||||||| ||||| || | |||||| ||||| Sbjct 335636 TCGGTGTTCTGGTTCTTGAGGCTCTTGACTTTCTCTTCCAGGCGGGAGATGCGCTCCAGC 335695 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||||| || || |||| ||| || | |||||| || || | ||| || || |||||| Sbjct 335696 TTCCGCCGCCGACACTTGGAGGCCGCGATGCGGTTGCGCAGCCGCTTGCGCTCGGCCTTG 335755 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 335756 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 335788 >seq735 Length=580319 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| | || ||||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 330050 TTGAGCGCTTTGACTTTCTCCTCCAAGCGGGCGATGCGCTCCAGCTTGCGCCGGCGGCAC 330109 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGG 241606 |||| || || | ||||| || || || || || || || || | ||| || ||| Sbjct 330110 TTGGAAGCCGCGATACGGTTACGCAGCCTTTTGCGCTCGGCTTTCAGGCGCTCTTGG 330166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931440461811200