Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq79 102 2e-16 >seq79 Length=1654135 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| | ||||||||||||||||||||| ||||| | || || || | | || |||| Sbjct 1256915 ACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAAAGGTCCCGAGCCCTCTGC 1256856 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| || |||| ||| |||| || | |||||||| ||||| |||||| ||| Sbjct 1256855 TCCTCCTTCCCCGTGTTCTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAGTGCCAGGGC 1256796 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||| |||| ||| | || ||||||| || Sbjct 1256795 TCCAAGTAGATGGCGAAGGCCCCGGGTCTCT 1256765 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||| | |||| |||| | ||||| || |||||||||||||||||||||| Sbjct 1258313 CCACCTCCTCCTGGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 1258254 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| || ||| | ||||||||||||||| |||| Sbjct 1258253 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCG 1258194 Query 221850 CGCCAGTCTCC 221860 || |||||| Sbjct 1258193 TCCCTGTCTCC 1258183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928752728259200