Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2320 196 3e-44 seq2713 91.5 1e-12 seq107 91.5 1e-12 >seq2320 Length=150232 Score = 196 bits (216), Expect = 3e-44 Identities = 377/551 (68%), Gaps = 4/551 (1%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || || ||||| || || || || ||| || || | |||| || | || || Sbjct 93212 TGCCATAGGCATTGACTTGGGCACCACCTACTCCTGCGTCGGAGTTTTCCAGCACGGGAA 93153 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || || ||||| |||||||| || | || ||||| |||||| | ||||| Sbjct 93152 AGTGGAGATTATCGCCAACGACCAAGGCAACCGCACCACACCGAGCTATGTTGCCTTTAC 93093 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || |||| || || |||||||| || || |||| | || ||||| || Sbjct 93092 GGACACGGAACGCCTCATCGGAGATGCAGCCAAGAATCAGGTGGCTATGAATCCCAACAA 93033 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || ||||||||||| || | | ||||| || || |||||||| | || || || || Sbjct 93032 CACCATTTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACCCAACGGTGCAGTC 92973 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 |||||| || |||||||| ||| | | || ||||| || || | | ||| Sbjct 92972 GGATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGGTGGGAAGCCCAAGGTGCAAGT 92913 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687 ||| ||||| | ||| || | || ||| ||||||| || ||||| || | Sbjct 92912 CGAGCACAAGGGTGAGAGTAAGTCCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGAC 92853 Query 474688 CAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGA-TGCAGTAATT 474745 ||||||||| ||| || ||| | || || || |||| | || ||| || ||| Sbjct 92852 CAAAATGAAGGAAATAGCTGAGG-CTTACCTGGGTTGCAAAGTC-CAGAGTGCTGTGATT 92795 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || ||||| || ||||| ||||| ||||||||||| || | ||| Sbjct 92794 ACTGTACCTGCCTACTTCAATGACTCCCAACGCCAAGCCACTAAAGATGCAGGTACCATT 92735 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 ||||||| || || || || || |||||||| || || || || || |||| |||||| Sbjct 92734 ACAGGTCTCAACGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGGT 92675 Query 474866 CTTGATAAGAA 474876 | ||||| || Sbjct 92674 TTGGATAAAAA 92664 Score = 190 bits (210), Expect = 1e-42 Identities = 553/844 (66%), Gaps = 18/844 (2%) Strand=Plus/Minus Query 475338 TCGAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAG 475397 |||||||||| | || || | | | || ||||||||| | || | ||||| || | Sbjct 92586 TCGAAGATGGCATCTTTGAAGTGAAATCTACTGCTGGAGATACCCACTTGGGTGGGGAGG 92527 Query 475398 ATTTTGATAATAGACTTGTA--TCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGT 475455 | ||||| ||| | | || ||| |||| || || |||||| | || |||| Sbjct 92526 ACTTTGACAATCGCATGGTGAGTCACTTTGTG--GAGGAATTCAAGCGCAAGCATAAGCG 92469 Query 475456 TGATCTTTC----AACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTG 475511 ||| || | |||| | |||| | |||| || | || || ||||| | | Sbjct 92468 TGACATTGCTGGCAACAAGCG----AGCAGTTCGACGGCTCCGCACAGCCTGTGAGAGAG 92413 Query 475512 CTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAG 475571 | ||||| | || || | ||||| || || |||| |||| || | ||||| | Sbjct 92412 CCAAGCGTACCCTGAGCTCCTCCACTCAGGCTTCTATTGAGATTGACTCATTATTTGATG 92353 Query 475572 GAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCT 475631 | ||||||| |||| ||||| | ||| ||||| || | | ||||||||| Sbjct 92352 GCATTGATTTCTATACATCCATTACCCGTGCTCGCTTTGAGGAGCTCAATGCTGATCTCT 92293 Query 475632 TTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCAC 475691 | | || ||||||| || || | | ||| | ||| |||| || |||||| || Sbjct 92292 TCCGTGGTACTCTTGAACCTGTGGAGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGAC 92233 Query 475692 AAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGC 475751 || | ||||||||||||| || || || ||||| | ||||| || || | | ||| Sbjct 92232 AAATTAATGAAATTGTTCTGGTTGGTGGCTCAACTCGTATTCCCAAGATCCAAAAGTTGC 92173 Query 475752 TTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTG 475811 | | | |||||||| ||| || |||| |||| ||||||||||||||||||| | Sbjct 92172 TCCAAGACTTCTTTAATGGAAAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCTGTGG 92113 Query 475812 CATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATA 475871 ||||||| |||||||| || || |||||| | ||| | || | ||||| | | | Sbjct 92112 CATATGGCGCTGCTGTGCAGGCTGCTATTCTGATGGGTGA--CAAATCAGAAAATGTACA 92055 Query 475872 ATA--TTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGAT 475929 | | | | || |||| ||| | |||||||| | ||| |||| || | ||| || | Sbjct 92054 AGACCTGCTGCTGCTTGATGTAGCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGT 91995 Query 475930 TATGACTAATCTTATTGACA-GAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTT 475988 |||||| |||| | | | | || || |||| || ||| || | | || Sbjct 91994 GATGACT-GCCTTAATCAAACGCAACACAACTATTCCCACCAAGCAAACCCAGACCTTCA 91936 Query 475989 CCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAAT 476048 |||| ||||| || || || | | ||| | ||| | | ||| ||||| ||| Sbjct 91935 CCACCTATTCAGACAACCAGAGTAGTGTGCTGGTGCAAGTATATGAGGGTGAGAGAGCCA 91876 Query 476049 TCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCA 476108 | || || || || || || || | ||| | || ||||||||| ||||| || Sbjct 91875 TGACCAAGGACAACAATCTGCTGGGCAAGTTTGACCTGACAGGTATTCCACCTGCACCTC 91816 Query 476109 GAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTA 476168 | || || || || ||||| || || ||||| || |||||||||||||| || ||||||| Sbjct 91815 GTGGTGTGCCCCAGATTGAGGTGACATTTGACATAGATGCAAATGGTATCCTCAATGTTA 91756 Query 476169 CTGC 476172 |||| Sbjct 91755 CTGC 91752 >seq2713 Length=103954 Score = 91.5 bits (100), Expect = 1e-12 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 299121 AGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAATAAAAGTC 299180 ||||||||||||| | | | ||| |||| |||||||||||||| |||| ||||||||||| Sbjct 54317 AGATTAAAAAAGCATTTCATAAACTAGCAATGAAATATCATCCAGACAAAAATAAAAGTC 54376 Query 299181 CTGAAGCGGAAGAAAAGTTT 299200 ||| ||| |||| ||| ||| Sbjct 54377 CTGGAGCAGAAGCAAAATTT 54396 >seq107 Length=1493841 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || || || || ||||| || || || ||||| || ||||||| Sbjct 1127740 ATGCCGTGGTCACAGTCCCGGCTTACTTCAATGACTCCCAGCGCCAAGCTACAAAAGATG 1127681 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| || || | || ||||||||||| ||||| ||||| || Sbjct 1127680 CCGGAACCATTGCTGGTCTCAACGTGCTCCGAATTATTAATGAGCCAACCGCAGCTGCGA 1127621 Query 474855 TTGCTTATGGTCTTG 474869 ||||||| || |||| Sbjct 1127620 TTGCTTACGG-CTTG 1127607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267839043823640