Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq32 206 3e-48 seq74 136 5e-27 >seq32 Length=1967196 Score = 206 bits (228), Expect = 3e-48 Identities = 645/993 (65%), Gaps = 13/993 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||| ||| | ||| || ||||||||||| | || || ||||| || || || | Sbjct 1079712 TGTCTCGTAAATGCTCTTCCAGACATTGAATTGCAAAAGGATCAACATCAGTATCAAACT 1079771 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||| || ||||||| |||||| || ||||||| || || | Sbjct 1079772 TGTTGGCAAAAAAATGATGT---TTCTGTAACATCCAGCTCAAGTCTCCGACTCCAAAGA 1079828 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | || || ||||| | || || || |||||||| ||||| |||| || || | || | Sbjct 1079829 CACATACAGAACGGACATGAACTCCATTGCAAGGTGGGTAAGGAGCACCCTTGGATACAT 1079888 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || |||| | |||||||||||||| ||| | || | ||| ||||| |||| Sbjct 1079889 CCCCCTCAAAGTAATCCCACTTCACAAACCGGGCAACGGCATTCATATCGGAAACATCGT 1079948 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 |||||| || | || || ||||| ||||| | || || ||||| | || ||||| Sbjct 1079949 ATTTGT-CACTGGCAGAGACTGCACCAGGAACTTCAGGGATTCGCTGGATTGTAGCCCAT 1080007 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| || || ||||| ||||| |||| |||||| || || | |||| ||| Sbjct 1080008 AAGTATTCATCAGGACTGTAAGTGTCTTTAGCCCATTCTATAAAAGCAAGGATTTTGCTG 1080067 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | || | || | || | || ||||| || || || || ||||| Sbjct 1080068 TTCTCTAATACATATTCCACAAATTTCCTATTAACAACAAAATAGGCACTTCCAGAGAAA 1080127 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || |||||| | ||| || | |||||| || | || ||| || | Sbjct 1080128 ATGGGTATGTTGAAAGGTGGATGCTGTTTGTCTATCCCCATTTTTTTTACCTTGCCATCA 1080187 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 || | | | | ||||||||||| ||| |||| | ||||| |||||| ||| Sbjct 1080188 ACTACTTCATAATGTTTCTTCCACCTCACCTCTTTGTTTGAAGGCATTTTTTCCGTTTCT 1080247 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||| || |||| | ||| | ||||| || || || |||||| | || ||||||| Sbjct 1080248 AAACTATTTTCACCATTGAGGGCTTTCAACTTCTCCACAATCTCTTGATTGGTCTTGATT 1080307 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 || || || | || || | || |||| ||||||||| || | || || ||| Sbjct 1080308 GGGAAATCCATGCCACAGAGATTGATCAAGTACTTCCAGCTCACATTCCTTCTGTAGAGG 1080367 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 ||| ||||||| || | || || || || |||||||| || || |||||||| | || Sbjct 1080368 TCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGAGGCATACACTACACTTTCC 1080427 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGA---CACGATTCCCACCACCGCC-AG 160819 | | ||||| || ||||| || ||||| || | | || ||| | ||| || Sbjct 1080428 AACTGGCTGGCAACGAAGACATTGGGAAAACATGATGCAATGCTTTTTACCGCTGCCAAG 1080487 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||||| || | ||| ||| || || | ||| || || ||||| ||||| Sbjct 1080488 AAAGA----CTCCGGGGACTTCTTGTCAACATGAATGCAGTAATAATTTTGAGGAGCGTA 1080543 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 |||| || || | | ||| | ||| | || ||||||| ||| || || || || Sbjct 1080544 TATGGTTCTCAGAAGTCCCTCAAGCATATTAATTTTATGATAAGCCACTATTGAATACGC 1080603 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 || ||||| || | || || | || || | | | | || || ||| |||| || Sbjct 1080604 AATGGGAAATTCTGCTTCTTCTTGGCTGAGAGGTTCCATAATATATTTCCGCTTCTTAAT 1080663 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| | ||||||| |||||||||||||| Sbjct 1080664 AAAGGAGGCACAATCAACTGTCATGTTGATATA 1080696 >seq74 Length=1667982 Score = 136 bits (150), Expect = 5e-27 Identities = 240/347 (69%), Gaps = 11/347 (3%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||||| || ||||| ||||||| |||| | ||| ||| |||||| | Sbjct 1606842 TGTGGCGCAGATACTCTTCCAGGCATTGGAGGGCGCAGTTGTCCACGCTGGGGTCGAACT 1606783 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGT---AGGATCCAGTGCACGTCTCCGGACCCGA 160161 | || ||||| || ||||| |||| || | |||| | | ||| || |||| Sbjct 1606782 TGTTGGCGAAGAGGTGGTG------CTGTGAGAGCAGCCAGCGGAGGTCCCCAAACCCAT 1606729 Query 160162 ACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCA 160221 | |||||||| | || || || ||| |||| | ||||| | ||||| || | Sbjct 1606728 AGACGCAGACCGCCCGCCGGTAGACTCCGGTGCACTGGGGGTAAGGGGCTCCCTTGCTGA 1606669 Query 160222 CGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGT 160281 |||| |||||| ||| ||||||||| | || ||| || || | |||||| | | | Sbjct 1606668 CGTCCCCTTCGCTGTAGGCCCACTTCACCACCCGGGCAATGGCGTTCATGTCCGTGAGAT 1606609 Query 160282 CGTATTTGTACATCAGG-GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCC 160340 || |||||| ||| | || || | ||||| || || ||||| || || | ||||||| Sbjct 1606608 CGAATTTGT-CATTATAAGGGACCGAGCCGGGCACCCCTGGCATGCGGTGCAAGGTGGCC 1606550 Query 160341 CACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAA 160387 || || || || ||||||||||| ||||| || ||||| || || || Sbjct 1606549 CAAAGATGCTCATCGGGGCTGTAGGTGTCTTTGGACCACTCTATCAA 1606503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577161983146800