Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2320 538 5e-148 seq2696 163 4e-35 seq1305 125 9e-24 seq2790 96.9 5e-15 seq3172 93.3 6e-14 >seq2320 Length=150232 Score = 538 bits (596), Expect = 5e-148 Identities = 1064/1558 (68%), Gaps = 40/1558 (3%) Strand=Plus/Minus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||||||| | || |||||||| ||||| || || || || ||||||||||| Sbjct 93151 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACCACACCGAGCTATGTTGCCTTTACG 93092 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | ||||| ||| | |||||||| || || |||||| |||||||| || | ||| Sbjct 93091 GACACGGAACGCCTCATCGGAGATGCAGCCAAGAATCAGGTGGCTATGAATCCCAACAAC 93032 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || | ||||| || |||||||| ||||| ||||| ||| || | || || Sbjct 93031 ACCATTTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACCCAACGGTGCAGTCG 92972 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 ||||| ||| ||||| ||| || || ||| | || ||||| | | | | Sbjct 92971 GATATGAAGCACTGGCCTTTCCGTGTGGTGA---GTGAAGGTGGGAAGCCCAAGGTGCAA 92915 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || || | ||||||| || || ||| ||||||||||| |||||||| ||| Sbjct 92914 GTCGAGCACAAGGGTGAGAGTAAGTCCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTG 92855 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | || |||||||| | || || ||| | ||||| | || | ||| || | Sbjct 92854 ACCAAAATGAAGGAAATAGCTGAGGCTTACCTGGGTTGCAAAGTCCAGAGTGCTGTGATT 92795 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||||||||| ||||||| ||| || ||||| || || || || || || | | | ||| Sbjct 92794 ACTGTACCTGCCTACTTCAATGACTCCCAACGCCAAGCCACTAAAGATGCAGGTACCATT 92735 Query 195779 GCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 | ||||| ||| || || | || || ||||| || || || ||||| ||||| ||||| Sbjct 92734 ACAGGTCTCAAC-GTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGG 92676 Query 195838 TCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 | |||| || || || | | || || ||||| |||||||||| | ||||| Sbjct 92675 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAATGTTCTGATCTTTGACTTGGGTGG 92616 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 ||| || |||||||| || || | | || |||| ||| || || ||||| || |||| Sbjct 92615 TGGCACATTTGATGTTTCCATTTTGACCATCGAAGATGGCATCTTTGAAGTGAAATCTAC 92556 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGT 196010 |||||| ||||| || | ||||| || || || || || | | |||| ||||| Sbjct 92555 TGCTGGAGATACCCACTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGTCACTTTGT 92496 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTC 196070 || || ||| || ||| ||||| || ||| |||| || | || |||| | Sbjct 92495 G-GAGGAATTCAAGCGCAAGCATAAGCGTGACATTGCTGGCAACAAGCGAGCAGTTCGAC 92437 Query 196071 GGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAACAA 196127 |||| | || || ||||| | ||||| || || || ||| || || ||| | Sbjct 92436 GGCTCCGCACAGCCTGTGAGAGAGCCAAGCGTACCCTGAGCTCCTCCAC---TCAGGCTT 92380 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 |||||||||| || || ||||| || ||||| ||||||||| | ||||||||||| | Sbjct 92379 CTATTGAGATTGACTCATTATTTGATGGCATTGATTTCTATACATCCATTACCCGTGCTC 92320 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 | ||||| ||| | || ||||| | || | | | |||||||| || | | | Sbjct 92319 GCTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAGGCTC 92260 Query 196248 TTCGTGACGCAAAGATGGATAA--GTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 ||||||| || ||| | || || | | || || |||||||||| || || || || || Sbjct 92259 TTCGTGATGCTAAGCTAGACAAAGGACAAA--TTAATGAAATTGTTCTGGTTGGTGGCTC 92202 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAA 196364 ||| |||||||| ||||| ||| || |||| | || |||||| ||| ||||| ||| Sbjct 92201 AACTCGTATTCCCAAGATCCAAAAGTTGCTC-CAAGACTTCTTTAATGGAAAAGAGCTAA 92143 Query 196365 ACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTC 196424 |||||| || || || |||||||| || || ||||| || || || ||||||||||| Sbjct 92142 ACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGCGCTGCTGTGCAGGCTGCTAT-- 92085 Query 196425 TCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCG 196481 ||| | | | |||||| | || || ||||| || ||||| |||||||| ||||| Sbjct 92084 TCTGATG-GGTGACAAATCAGAAAATGTACAAGACCTGCTGCTGCTTGATGTAGCACCAC 92026 Query 196482 TATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAA 196541 | || |||||| |||| || || |||||||| |||||| | || | | ||||||| Sbjct 92025 TTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAACGCAACACAA 91966 Query 196542 CTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAG----GT 196597 ||||||| || ||| | || ||| | || ||||| || ||||||| || Sbjct 91965 CTATTCCCACCAAGCAAACCCAGACCTTCACCACCTATTCAGA----CAACCAGAGTAGT 91910 Query 196598 GTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGA 196657 || | | ||||||||||| || || | || | ||||| ||| |||| || || Sbjct 91909 GTGCTGGTGCAAGTATATGAGGGTGAGAGAGCCATGACCAAGGACAACAATCTGCTGGGC 91850 Query 196658 ACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGC 196717 | || || |||| || |||||| ||||||| | ||||| || |||||| | || Sbjct 91849 AAGTTTGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAGATTGAGGTGACA 91790 Query 196718 TTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAA 196777 || || ||||| |||||||| || || || || || || | ||||||| | || ||| Sbjct 91789 TTTGACATAGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCACAGGAAAA 91730 Query 196778 TCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGT 196837 | ||||| || || |||||||| || || || || || || ||||| || Sbjct 91729 GAGAACAAGATCACAATAACTAATGACAAAGGCCGCCTCAGCAAAGATGACATTGACCGC 91670 Query 196838 ATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG-TATATGAGAAACAGATG 196894 ||||| ||||| || || |||| || ||| || |||| || |||||| || || Sbjct 91669 ATGGTGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGAGGCTAACCGAGAAAGAGTTG 91612 >seq2696 Length=106704 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | || || ||||| |||||||| ||||| ||| | Sbjct 61585 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61644 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| ||||| || || ||||| ||||||||||| || || || Sbjct 61645 GACACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61704 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || |||||||| || ||||| ||||| || || || ||| |||| |||||| Sbjct 61705 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAAC 61764 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || || ||||| || | || |||||||| Sbjct 61765 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGT 61812 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | || || ||||| |||||||| ||||| ||| | Sbjct 61357 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61416 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| ||||| || || ||||| ||||||||||| || || || Sbjct 61417 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61476 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || |||||||| || ||||| ||||| || || || ||| |||| |||||| Sbjct 61477 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAAC 61536 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || ||||| || | || ||||||| Sbjct 61537 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 61583 Score = 158 bits (174), Expect = 2e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 171865 CAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGAC 171924 || ||||||||||| ||| | || || ||||| |||||||| ||||| ||| | ||| Sbjct 62508 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGTGAC 62567 Query 171925 ACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAA 171984 || || || || |||| ||||| || || ||||| ||||||||||| || || || || Sbjct 62568 ACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAACAG 62627 Query 171985 CGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTT 172044 || | || |||||||| || ||||| ||||| || || || ||| |||| |||||| | Sbjct 62628 AGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAACATC 62687 Query 172045 CAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || |||||||| || || || ||||| || | || |||||||| Sbjct 62688 CAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGT 62732 >seq1305 Length=349135 Score = 125 bits (138), Expect = 9e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || | ||||| || || |||||||| ||||| ||| | Sbjct 275648 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 275707 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || ||||| || || || |||||||||||||| || || || Sbjct 275708 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGACCAA 275767 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 || | || || ||||| || || ||||| |||||||| || |||||| | || ||||| Sbjct 275768 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 275826 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 171940 AAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCT 171999 || ||||| || || || || ||||||||||| || || || || | || || |||||| Sbjct 265558 AAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAACAGAGGCTGATCTTTGCT 265617 Query 172000 GGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACT 172059 || || ||| | |||||||| || || ||| |||| |||||| | || || ||||| ||| Sbjct 265618 GGAAAGCAGTTAGAAGATGGCCGCACTCTCTCTGACTACAACATCCAGAAAGAGTCCACT 265677 Query 172060 CTACACCTTGTTCT 172073 || || ||||| || Sbjct 265678 CTCCATCTTGTCCT 265691 >seq2790 Length=96605 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/132 (77%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 |||||||||||||| ||| | |||||| | || || |||||||| |||||||| |||| | Sbjct 86455 AAGGAAGGCATTCCTCCCAACCAGCAAAGGCTGATCTTTGCTGGCAAACAGCTGGAAGGT 86396 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 || | || ||| | | |||||| | | |||||||||| || ||||| || || || Sbjct 86395 GGCTGCACTCTCTCCAACTACAACATCC---AGGAGTCTACCCTCCACCTGGTCCTGAGT 86339 Query 172078 CTTCGGGGTGGT 172089 || |||||||| Sbjct 86338 CTCAGGGGTGGT 86327 >seq3172 Length=68839 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||||||||| ||||| ||||| |||||||| ||||| ||| | Sbjct 26796 ATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCAAGT 26855 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 |||||||| || || |||| || || ||||| || |||||||| Sbjct 26856 GACACAATTGAAAATGTCAAGGCAAAAATTCAGGACAAGGAAGG 26899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657797189389600