Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2696 104 4e-17 >seq2696 Length=106704 Score = 104 bits (114), Expect = 4e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| | |||||| |||| || || || ||||| | || | ||| || || || | Sbjct 61819 TTTAAAAACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGT 61760 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 |||| || | || | || || | || || || ||||| || ||||||||||| | Sbjct 61759 AGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGT 61700 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 ||||||| || ||||||||||| || ||||||| || | |||| ||| || || | Sbjct 61699 CAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGG 61640 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || ||||| || || ||||| || || | || || ||||| || ||||| Sbjct 61639 GCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 100 bits (110), Expect = 5e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| |||| || || || ||||| | || | ||| || || || ||||| Sbjct 61586 ATGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 61527 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || || | || || || ||||| || ||||||||||| |||||| Sbjct 61526 GAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGA 61467 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||||| || | ||| ||| || || | ||| Sbjct 61466 GGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 61407 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || ||||| || || | || || ||||| || |||||||| Sbjct 61406 ACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| | |||||| |||| || || || ||||| | || | ||| || || || | Sbjct 62739 TTTAAAAACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGT 62680 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 |||| || | || | || || | || || || ||||| || ||||||||||| | Sbjct 62679 AGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGT 62620 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 ||||||| || ||||||||||| || ||||||| || | |||| ||| || || | Sbjct 62619 CAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGG 62560 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || ||||| || || ||||| || || | || || ||||| || || Sbjct 62559 GCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899565221757600