Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2696 91.5 2e-13 seq1305 87.8 3e-12 >seq2696 Length=106704 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || ||||| || ||||| || || |||| || || Sbjct 61354 AAAATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 61413 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||| | ||| || || || ||||| || |||||||||||||| ||||| || Sbjct 61414 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGAC 61473 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||| |||||||| | ||| || |||||||| ||||| Sbjct 61474 CAACAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGA 61511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || ||||| || || |||| || || | Sbjct 61585 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61644 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||||| || |||||||||||||| ||||| || ||| Sbjct 61645 GACACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61704 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || |||||||| | ||| || |||||||| ||||| Sbjct 61705 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGA 61739 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 155826 CAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGAT 155885 || || ||| | || || ||||| || ||||| || || |||| || || ||| Sbjct 62508 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGTGAC 62567 Query 155886 AATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAA 155945 | ||| ||| || || ||||| || |||||||||||||| ||||| || ||||| Sbjct 62568 ACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAACAG 62627 Query 155946 AGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 |||||||| | ||| || |||||||| ||||| Sbjct 62628 AGATTGATCTTTGCTGGCAAGCAGCTGGAAGA 62659 >seq1305 Length=349135 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || ||||||||||| || || || || | || || || Sbjct 275645 AAAATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCA 275704 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||| | ||| || ||||| ||||| || || || |||||||| |||||||| Sbjct 275705 AGTGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGAC 275764 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||| || |||| | |||||| |||||||| ||||| Sbjct 275765 CAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGA 275802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731799453188000