Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2696 109 1e-18 seq2281 89.7 1e-12 seq520 87.8 4e-12 >seq2696 Length=106704 Score = 109 bits (120), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | ||| | || | ||| || ||| || || ||| Sbjct 61586 ATGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 61527 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || ||||||||||| ||||||||||| ||||| Sbjct 61526 GAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGA 61467 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || ||||| || ||||| || | || | || Sbjct 61466 GGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 61407 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || |||||||| || || || || || | ||| ||||||||||| Sbjct 61406 ACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 109 bits (120), Expect = 1e-18 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 192298 AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATA 192357 ||||||| || ||||| || ||||| | || | ||| | || | ||| || ||| Sbjct 61821 AGTTTAAAAA--CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATG 61764 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || ||||| | || || | || |||| || || ||||||||||| ||||||||| Sbjct 61763 TTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGT 61704 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 || ||||| || || ||||||||||| || ||||| || ||||| || | || Sbjct 61703 TGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCA 61644 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || ||||| || |||||||| || || || || || | ||| |||||||| Sbjct 61643 CTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 104 bits (114), Expect = 5e-17 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 192298 AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATA 192357 ||||||| || ||||| || ||||| | || | ||| | || | ||| || ||| Sbjct 62741 AGTTTAAAAA--CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATG 62684 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || ||||| | || || | || |||| || || ||||||||||| ||||||||| Sbjct 62683 TTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGT 62624 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 || ||||| || || ||||||||||| || ||||| || ||||| || | || Sbjct 62623 TGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCA 62564 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 | || || ||||| || |||||||| || || || || || | ||| ||||| Sbjct 62563 CTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq2281 Length=154634 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 49875 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 ||||| | ||||||||||| |||||||| || ||||||||||| | ||||||| || | Sbjct 5547 AAAGTAAGGCCTGGCATTAACCCTCTCTTCTTGAGCCAAAATATGGCTGCAAAAGCACCA 5606 Query 49935 GAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTT 49976 |||||||| || || |||||| ||||| || || | |||| Sbjct 5607 GAAAAGAAGATTCCTTCGACAGCAGCAAACGCAATCACTCTT 5648 >seq520 Length=716008 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||||||||| | || ||| |||| ||||||||||| |||||||| ||||| | Sbjct 122112 GATGTTATAATCAGACAGAGTACGTCCATCCTCCAATTGTTTGCCAGCAAAAATTAAACG 122053 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTT 192439 |||||| ||||| || ||||||| || Sbjct 122052 CTGTTGGTCAGGAGGAATTCCTTGTT 122027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984379973755500